View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_6 (Length: 524)
Name: NF20082_low_6
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 4142023 - 4142510
Alignment:
| Q |
17 |
atttagattgatggcatgtctgatgtccgacatgtaatagtgtttgccacttacttgacacgacagacacatattgttacactcaattactttatatttt |
116 |
Q |
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| T |
4142023 |
atttagattgatggcatgtctgatgtccgacatgtaatagtgtttg-----------acacgacagacacatattgttacactcaattactttatatttt |
4142111 |
T |
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| Q |
117 |
cttaaattt--atcagtgtctacttagtgccatgtcttgtgtctgtacttcgtaggagaaaactcatagcatgcatcgatttaattacgtacctgagatg |
214 |
Q |
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||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142112 |
cttaaatttttatcagtttctacttagtgtcatgtcttgtgtctgtacttcgtaggagaaaactcatagcatgcatcgatttaattacgtacctgagatg |
4142211 |
T |
|
| Q |
215 |
cagtgatacctattacttcaagagttgatccacttaggagtgtctctctagtgatattgatttgattgtaacgtagttgttctaactcttcgattggcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142212 |
cagtgatacctattacttcaagagttgatccacttaggagtgtctctctagtgatattgatttgattgtaacgtagttgttctaactcttcgattggcca |
4142311 |
T |
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| Q |
315 |
ctgcagtaatcgcttcccactttcatcaagccaaaacttccttggaattgtctacattgtagagaaactctaatcattcatcaaatcttgtaactattat |
414 |
Q |
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| T |
4142312 |
ctgcagtaatcgcttcccactttcatcaagccaaaacttccttggaattgtctacattgtagagaaactctaatcattcatcaaatcttgtaactattat |
4142411 |
T |
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| Q |
415 |
ctagatcatgttataatatagttgtataagtataacgcataacgaagctagaataggatacctgtagaccagcccatcctctttcaatgccatcttctt |
513 |
Q |
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| T |
4142412 |
ctagatcatgttataatatagttgtataagtataacgcataacgaagctagaataggatacctgtagaccagcccatcctctttcaatgccatcttctt |
4142510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 194 - 441
Target Start/End: Original strand, 4128506 - 4128753
Alignment:
| Q |
194 |
tttaattacgtacctgagatgcagtgatacctattacttcaagagttgatccacttaggagtgtctctctagtgatattgatttgattgtaacgtagttg |
293 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| || |||| |
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| T |
4128506 |
tttaattacgtacctgtgatgcagtgataccttttacttcaagagttgatccactttggagtgtttctccagtgatattgatttgattgccaccaagttt |
4128605 |
T |
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| Q |
294 |
ttctaactcttcgattggccactgcagtaatcgcttcccactttcatcaagccaaaacttccttggaattgtctacattgtagagaaactctaatcattc |
393 |
Q |
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| T |
4128606 |
ttctaactcttcaattggccactgcattaatctctccccactttcatcaagccaaaacttccttggaatagtctacattgtagagaaataataaccattc |
4128705 |
T |
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| Q |
394 |
atcaaatcttgtaactattatctagatcatgttataatatagttgtat |
441 |
Q |
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| T |
4128706 |
atcaaatcttgtaactattaactagagcattctataatataattgtat |
4128753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 203 - 434
Target Start/End: Original strand, 4137128 - 4137359
Alignment:
| Q |
203 |
gtacctgagatgcagtgatacctattacttcaagagttgatccacttaggagtgtctctctagtgatattgatttgattgtaacgtagttgttctaactc |
302 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||| ||||||||| |
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| T |
4137128 |
gtacctgagatgcagtgataccttttacttcaagagttgatccactttggagtgtttctccggtgatattgatttgtttgccacgaagtttttctaactc |
4137227 |
T |
|
| Q |
303 |
ttcgattggccactgcagtaatcgcttcccactttcatcaagccaaaacttccttggaattgtctacattgtagagaaactctaatcattcatcaaatct |
402 |
Q |
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||| |||||||| |||| |||| |||||||| | | ||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
4137228 |
ttcaattggccattgcattaattgcttcccattcttatcaagccagaacttccttggaattgtctacattgtaaataaacactaatcattcatcaaatct |
4137327 |
T |
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| Q |
403 |
tgtaactattatctagatcatgttataatata |
434 |
Q |
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| T |
4137328 |
tataactattatctagatcaggttataatata |
4137359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 4117379 - 4117450
Alignment:
| Q |
301 |
tcttcgattggccactgcagtaatcgcttcccactttcatcaagccaaaacttccttggaattgtctacatt |
372 |
Q |
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||||| |||||||| |||| |||| ||||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
4117379 |
tcttcaattggccattgcatcaatctcttcccacttttatctagccaaactttccttggaattgtctacatt |
4117450 |
T |
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