View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_8 (Length: 469)
Name: NF20082_low_8
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Complemental strand, 42766071 - 42765624
Alignment:
| Q |
8 |
acataatactcaaattttgacaatttgggagttgggttaaaactttaaaactcactagtgaattaacatcatcttgagggttgcactgcgttgatattaa |
107 |
Q |
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| T |
42766071 |
acatgatactcaaattttgacaatttgggagttgggttaaaactttaaaactcactagtgaattaacatcatcttgagggttgcactgcgttgatattaa |
42765972 |
T |
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| Q |
108 |
tactatttcaaaaatgaaagcatgtaatttacaatgataaactttacaaattaaacccaacgaagatatgttcaatttttcattttaaataaaaaataat |
207 |
Q |
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| T |
42765971 |
tactatttcaaaaatgaaagcatgtaatttacaatgataaactttacaaattaaacccaacgaagatatgttcaatttttcattttaaataaaaaataat |
42765872 |
T |
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| Q |
208 |
aatcattctgcatatataattttgttaagtagtgcaattgatctcagtttcaaaccacaatgtcaattgcatttagggtcaagcatgaaacatacaatcc |
307 |
Q |
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| T |
42765871 |
aatcattctgcatatataattttgttaagtagtgcaattgatctcagtttcaaaccacaatgtcaattgcatttagggtcaagcatgaaacatacaatcc |
42765772 |
T |
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| Q |
308 |
aaacgtatatgcagaaaattgtaaagacaatttgggacaagctttttagagtaaaagagcaaagattcaatccaatactaagaaattcttaattcaagaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765771 |
aaacgtatatgcagaaaattgtaaagacaatttgggacaagctttttagagtaaaagagcaaagattcaatccaatactaagaaattcttaattcaagaa |
42765672 |
T |
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| Q |
408 |
tagtgatttctaatttataagatctatagttgcatccgtaccaatgtg |
455 |
Q |
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| T |
42765671 |
tagtgatttctaatttataagatctatagttgcatccgtaccaatgtg |
42765624 |
T |
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