View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20082_low_9 (Length: 461)

Name: NF20082_low_9
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20082_low_9
NF20082_low_9
[»] chr4 (9 HSPs)
chr4 (8-197)||(31150437-31150626)
chr4 (270-445)||(31150704-31150879)
chr4 (10-145)||(31161733-31161868)
chr4 (39-144)||(31034102-31034207)
chr4 (121-171)||(31159451-31159501)
chr4 (379-445)||(31476592-31476658)
chr4 (10-79)||(31476882-31476951)
chr4 (375-445)||(31162086-31162154)
chr4 (59-149)||(31528549-31528639)
[»] chr6 (2 HSPs)
chr6 (339-376)||(12781883-12781920)
chr6 (371-415)||(12781930-12781974)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 31150437 - 31150626
Alignment:
Q  8 ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150437 ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc 31150536  T
Q  108 caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150537 caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca 31150626  T

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Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 270 - 445
Target Start/End: Original strand, 31150704 - 31150879
Alignment:
Q  270 ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150704 ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca 31150803  T
Q  370 tcaataaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctcc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150804 tcaataaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctcc 31150879  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 31161733 - 31161868
Alignment:
Q  10 acatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaaccca 109  Q
    |||||||||| ||| |||||||||||||||||||||||||| | |  | |||||| ||||||  ||||||  ||||||||| | | | ||||||||||||    
T  31161733 acatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcccagctaaataatttggaagacttgtagacttgtaaccca 31161832  T
Q  110 acatatttacaatctcttcaacgatcttttcaatct 145  Q
      ||||| | ||| ||||| ||||||||||||||||    
T  31161833 gtatattcataatttcttcgacgatcttttcaatct 31161868  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 31034102 - 31034207
Alignment:
Q  39 tttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttt 138  Q
    |||||||||||| | || | ||||||  ||||| ||||||| |||||||||| | ||||||  |||||||||  ||||||  ||||||||||| ||||||    
T  31034102 tttttctaattcttctataagagaatcaatcccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttt 31034201  T
Q  139 tcaatc 144  Q
    ||||||    
T  31034202 tcaatc 31034207  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 31159451 - 31159501
Alignment:
Q  121 atctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta 171  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  31159451 atctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta 31159501  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 31476658 - 31476592
Alignment:
Q  379 aagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctcc 445  Q
    ||||||| |||||||| ||||| |||||| |||||||||| ||| ||||||||||| ||| ||||||    
T  31476658 aagattatttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctcc 31476592  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31476951 - 31476882
Alignment:
Q  10 acatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaat 79  Q
    ||||||||||  ||||||||||||||| | ||||||||||| |||  |||||||| |||||| |||||||    
T  31476951 acatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaat 31476882  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 445
Target Start/End: Original strand, 31162086 - 31162154
Alignment:
Q  375 aaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctcc 445  Q
    |||||||||||||||||||| ||| |||||||| ||  |||||||||| ||||||||  | ||||||||||    
T  31162086 aaggaagattacttacttatgacgcacatcccaacc--agagattggcgacttgtgtttgagcttccctcc 31162154  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 31528549 - 31528639
Alignment:
Q  59 gagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgc 149  Q
    |||||||| |||| |||||||  ||||||||  | ||||| ||| ||  ||| |||||||| ||||||||||| ||||||| |||||||||    
T  31528549 gagaatgcgtcccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgc 31528639  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 12781883 - 12781920
Alignment:
Q  339 caaagctttaaaatttgcacatgtaagtgcatcaataa 376  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  12781883 caaagctttaaaatttgcacaagtaattgcatcaataa 12781920  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 12781930 - 12781974
Alignment:
Q  371 caataaggaagattacttacttataacgtacatcccatccagaga 415  Q
    |||||||||||||| ||||||||| ||||| |||||| |||||||    
T  12781930 caataaggaagattgcttacttatcacgtagatcccagccagaga 12781974  T

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