View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_11 (Length: 432)
Name: NF20083_high_11
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 41088328 - 41088734
Alignment:
| Q |
11 |
cataggagtggagattcgattgatctactgaaccagaacattcgaggcacgtgggagtttaacgttgctttcacgaaagatgccatcatacgtagtagta |
110 |
Q |
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| T |
41088328 |
cataggagtggagattcgattgatctactgaaccagaacattcgaggcacgtgggagtttaacgttgctttcacgaaagatgccatcatacgtagtagta |
41088427 |
T |
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| Q |
111 |
ttcatagttgaggatcagtgccttccacgtctcaaactccttccaattcatattttaactattgctcaataaaaataatatgttattgcaattcataatt |
210 |
Q |
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| T |
41088428 |
ttcatagttgaggatcagtgccttccacgtctcaaactccttccaattcatattttaactattgctcaataaaaataatatgttattgcaattcataatt |
41088527 |
T |
|
| Q |
211 |
acttctaaccctaaccaaccatgcatttgtcttgaaatttgcatgtatcaaaaattcaaagggcgacctccatgcataaccgttgcaattaattaaggta |
310 |
Q |
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| T |
41088528 |
acttctaaccctaaccaaccatgcatttgtcttgaaatttgcatgtatcaaaaattcaaagggcgacctccatgcataaccgttgcaattaattaaggta |
41088627 |
T |
|
| Q |
311 |
tattattatacagtgcatgtgcaattgctggttctcttgatgaatgttgacggtcagaaaatcagaatgagtataaattaagccatcatgattgaagatg |
410 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41088628 |
tattattatacagtgcatgtgcaattgctggctctcttgatgaatgttgacggtcagaaaatcagaatgagtataaattaagccatcatgattgaagatg |
41088727 |
T |
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| Q |
411 |
atgagat |
417 |
Q |
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| T |
41088728 |
atgagat |
41088734 |
T |
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