View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_15 (Length: 416)
Name: NF20083_high_15
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 52033737 - 52034127
Alignment:
| Q |
18 |
catataataatcaaggtcacattaatatgagtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccat |
117 |
Q |
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| T |
52033737 |
catataataatcaaggtcacattaatatgagtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccat |
52033836 |
T |
|
| Q |
118 |
atttaatggaaagtaagttatggttaagttacattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033837 |
atttaatggaaagtaagttatggttaagttacattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagag |
52033936 |
T |
|
| Q |
218 |
atatatatcatcaacttcaatcttcccgaactggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033937 |
atatatatcatcaacttcaatcttcccgaactggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgt |
52034036 |
T |
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| Q |
318 |
tacgcttgtggtttcatttttacttgcacttgcattgtgtattttcatgaaagaagagatacaaatgccatggtgggctctcacctttgct |
408 |
Q |
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| T |
52034037 |
tacgcttgtggtttcatttttacttgcacttgcattgtgtattttcaagaaagaagagatacaaatgccatggtgggctctcatctttgct |
52034127 |
T |
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