View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_high_18 (Length: 401)
Name: NF20083_high_18
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_18 |
 | |
|
| [»] scaffold0617 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 11849595 - 11849980
Alignment:
| Q |
9 |
atcaaaggcctacaaactatatgatccagtttccaagaaagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11849595 |
atcaaaggcctacaaactatatgatccagtttccaagaaagtaatcattagtaaggatgtgatttttgaagaagatgtatgttggaactggaacaaccaa |
11849694 |
T |
|
| Q |
109 |
aaagatgaatgtaggccagatcttttagagtggaaaaatgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgcta |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11849695 |
aaagatgaatgcaggccagatcttttagagtggaaaaatgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgcta |
11849794 |
T |
|
| Q |
209 |
gcaatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcattaggatgactcacccaatgtcgttgaagggagggtaagaaaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11849795 |
gcaatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcatgaggatgactcacccaatgtcgttgaagggagggtaagaaaaac |
11849894 |
T |
|
| Q |
309 |
accttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgatgatg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11849895 |
accttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgaagatg |
11849980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 5876269 - 5876640
Alignment:
| Q |
9 |
atcaaaggcctacaaactatatgatccagtttccaagaaagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5876269 |
atcaaaggcctacaaactatatgatccagtttccaagaaagtaatcattagtaaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaa |
5876368 |
T |
|
| Q |
109 |
aaagatgaatgtaggccagatcttttagagtggaaaaatgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgcta |
208 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5876369 |
aaagatgaatgcaggc--------------tggaaaaatgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgcta |
5876454 |
T |
|
| Q |
209 |
gcaatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcattaggatgactcacccaatgtcgttgaagggagggtaagaaaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5876455 |
gcaatgataataacaataacaatgatgaatctaattcatcgtctagtgaatctcatgaggatgactcacccaatgtcgttgaagggagggtaagaaaaaa |
5876554 |
T |
|
| Q |
309 |
accttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgatgatg |
394 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5876555 |
accttcatggatggcatattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctgaagatg |
5876640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 26554168 - 26554328
Alignment:
| Q |
9 |
atcaaaggcctacaaactatatgatccagtttccaagaaagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaa |
108 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
26554168 |
atcaaaggcctacaggttatatgatccaatttccaagaaaataatcattagcaaagatgtgatttttgaagaagatgaatgctggaattgggacagaagc |
26554267 |
T |
|
| Q |
109 |
aaagatgaatgtaggccagatcttttagagtggaaaaatgattatgagattgacattgaag |
169 |
Q |
| |
|
||||| |||||||| | ||| ||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
26554268 |
aaagaggaatgtagtctggatgttttagagttcaaaaatgattccgagaatgacattgaag |
26554328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 26554438 - 26554527
Alignment:
| Q |
288 |
tgaagggagggtaagaaaaacaccttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgat |
377 |
Q |
| |
|
||||||||||||||||| | |||| | ||||||| ||| |||||||| |||||||| || || ||||||||| | ||||||||||||| |
|
|
| T |
26554438 |
tgaagggagggtaagaagaccaccgtgttggatggaagactatgaaacaggtgaaggtttgtcagatgaagatggtatgaatgcaatgat |
26554527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 1681 - 1606
Alignment:
| Q |
314 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
389 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| | |||||||| || ||| |||| ||||||||||||||| |||| |
|
|
| T |
1681 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
1606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 7125 - 7050
Alignment:
| Q |
314 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
389 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| | |||||||| || ||| |||| ||||||||||||||| |||| |
|
|
| T |
7125 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
7050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 14246301 - 14246376
Alignment:
| Q |
314 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
389 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| | |||||||| || ||| |||| ||||||||||||||| |||| |
|
|
| T |
14246301 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
14246376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University