View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_20 (Length: 387)
Name: NF20083_high_20
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 5037112 - 5036753
Alignment:
| Q |
19 |
gcggactggaacccaagtctacactggaaatcaatgccaaatgagtttgcagaagattcaccatatgatccggttgctatagatgaaaagactacagtaa |
118 |
Q |
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| T |
5037112 |
gcggactggaacccaagtctacactggaaatcaatgccaaatgagtttgcagaagattcaccatatgatccagttgctatagatgaaaagactacagtaa |
5037013 |
T |
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| Q |
119 |
atgtatccaactggaacttccagaagaattttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaatttgaagaatcagctgt |
218 |
Q |
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| T |
5037012 |
atgtatccaactggaacttccagaagaattttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaattttaagaatcagctgt |
5036913 |
T |
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| Q |
219 |
cactaaccagcaaggtctataactgagatcaagaaaagtatttgaaatgactttgggaaaaagttaccaggtttatgaacacaagtgttgtgttcaaaaa |
318 |
Q |
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| T |
5036912 |
cactaaccagcaaggtctataactgagatcaagaaaagtatttgaaatgactttgggaaaaagttatcaggtttatgaacacaagtgttgtgttcaaaaa |
5036813 |
T |
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| Q |
319 |
ataagtactagaattttatttattatcaaaataatatgaagatcatcaataaagtattat |
378 |
Q |
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| T |
5036812 |
ataagtactagaattttatttattatcaaaataatatgaagatcatcaataaagtattat |
5036753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 41 - 362
Target Start/End: Complemental strand, 5031964 - 5031628
Alignment:
| Q |
41 |
actggaaatcaatgccaaatgagtttgcagaagattcaccatatgatccggttgctatagatgaaaagactacagtaaatgtatccaactggaacttcca |
140 |
Q |
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| T |
5031964 |
actggaaatcaatgccaaatgagtttgcagaagattcaccatatgatccagttgctatagatgaaaagactaatgtaaatgtatccaactggaacttcca |
5031865 |
T |
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| Q |
141 |
gaagaattttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaatttgaagaatcagctgtcactaaccagcaaggtctataa |
240 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5031864 |
gaaaaattttgaatgggaaaaagctttgtgcatttccaaatcatcgaatggtcatcatcaatttgaagaatcagctgtcacaaaccagcaaggtctatat |
5031765 |
T |
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| Q |
241 |
ctgagatcaagaaaagtatttgaaatgactttgggaaaaagttaccaggtttatgaacacaagtgttg---------------tgttcaaaaaataagta |
325 |
Q |
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| T |
5031764 |
ctgagatcaagaaaagtatttgaaatgactttgggaaaaagttatcaggtttatgagcacaagtgttgtgttttttattgttgtgttaagaaaataagta |
5031665 |
T |
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| Q |
326 |
ctagaattttatttattatcaaaataatatgaagatc |
362 |
Q |
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| T |
5031664 |
ctagaattgtatttattatcaaaataatatgaagatc |
5031628 |
T |
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