View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_25 (Length: 318)
Name: NF20083_high_25
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 63 - 302
Target Start/End: Original strand, 41310217 - 41310457
Alignment:
| Q |
63 |
ctactctctctgcatgttcatgtaatctatattattatatactatacatgcnnnnnnn-tattcaaaataagaaggtttggaattggagtacacaaacta |
161 |
Q |
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| T |
41310217 |
ctactctctctgcatgttcatgtaatctatattattatatactatacatgcaaaaaaaatattcaaaataagaaggtttggaattggattacacaaacta |
41310316 |
T |
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| Q |
162 |
accacaatggtgaggcccctaaatgcatcaagtgttgcaatccgttttgtcttttgcttaactagtagtacaggctgctgatcatcctgttcagctattt |
261 |
Q |
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| T |
41310317 |
accacaatggtgaggcccctaaatgcatcaagtgttgcaacccgttttgtcttttgcttaactagtagtacaggctgctgatcatcctgttcagctattt |
41310416 |
T |
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| Q |
262 |
gctgcttaatatcagaatctccattaatattagttgtttct |
302 |
Q |
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| T |
41310417 |
gctgcttaatatcagaatctccattaatattagttgtttct |
41310457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 41325080 - 41325141
Alignment:
| Q |
162 |
accacaatggtgaggcccctaaatgcatcaagtgttgcaatccgttttgtcttttgcttaac |
223 |
Q |
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| T |
41325080 |
accacaatggtgagacccctaaatgcatcaagtgtagcaaccctctttgtcttttgcttaac |
41325141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 27656273 - 27656230
Alignment:
| Q |
158 |
actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaa |
201 |
Q |
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| T |
27656273 |
actaaccacgattgtgaggcccctaaatgcatcaagagttgcaa |
27656230 |
T |
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