View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20083_high_30 (Length: 280)

Name: NF20083_high_30
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20083_high_30
NF20083_high_30
[»] chr4 (16 HSPs)
chr4 (7-266)||(3954369-3954610)
chr4 (7-266)||(4002220-4002478)
chr4 (10-266)||(4025150-4025405)
chr4 (7-266)||(4009917-4010175)
chr4 (9-266)||(3801509-3801765)
chr4 (9-120)||(4218566-4218677)
chr4 (10-266)||(3809940-3810195)
chr4 (161-266)||(3987069-3987174)
chr4 (163-266)||(4218719-4218822)
chr4 (7-119)||(3986916-3987028)
chr4 (161-266)||(3817658-3817763)
chr4 (161-266)||(3919701-3919806)
chr4 (161-266)||(3932925-3933030)
chr4 (6-57)||(3933121-3933172)
chr4 (6-52)||(3817516-3817562)
chr4 (6-52)||(3919902-3919948)
[»] chr5 (1 HSPs)
chr5 (7-264)||(13397871-13398127)
[»] scaffold1360 (1 HSPs)
scaffold1360 (220-266)||(1920-1966)
[»] chr8 (6 HSPs)
chr8 (6-40)||(7023411-7023445)
chr8 (6-40)||(7075419-7075453)
chr8 (6-52)||(7092860-7092906)
chr8 (7-40)||(7036509-7036542)
chr8 (213-266)||(7069128-7069181)
chr8 (218-266)||(7075639-7075687)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 3954610 - 3954369
Alignment:
7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
3954610 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattattagacaacccatttggtgaatcgattttcacatcttctgctaata 3954511  T
107 gtgtagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaac 206  Q
    |||| ||||||||||                  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3954510 gtgttgaaaaaagct------------------gttccgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaac 3954429  T
207 ttcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
3954428 ttcggttataaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattc 3954369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 4002220 - 4002478
Alignment:
7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||| ||||||||||||||  ||||||||||||||||||||||    
4002220 acatcatcaagaacaataagaaccttcatacggccaatcatcctctgaatataattagacagcccatttggtgaattaattttcacatcttctgctaata 4002319  T
107 gtgtagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaac 206  Q
    ||||||||||||||| ||| |        || | || | ||||||||| |||| ||||| |||||| ||||||||||| |||||||||||||||||||||    
4002320 gtgtagaaaaaagct-tttcttttaaaaatgttattccatgccttcctgattcttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaac 4002418  T
207 ttcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
4002419 ttcggttaaaaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattc 4002478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 4025150 - 4025405
Alignment:
10 tcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagtg 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||     
4025150 tcatcaagaacaataaggaccttcatacggccaatccttctctcaatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtc 4025249  T
110 tagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttc 209  Q
    |||||||||| | ||| |        || | || | || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||     
4025250 tagaaaaaag-tttttctttcaaaaatgttattccatgtcttcctaattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaatttt 4025348  T
210 ggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    | ||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||    
4025349 gtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaaattc 4025405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 4009917 - 4010175
Alignment:
7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  | ||| || ||||||||||||||| |||  |||||||||||||||||||||||    
4009917 acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata 4010016  T
107 gtgtagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaac 206  Q
    ||||||||||||| | ||| |        || | || | || ||||||||||  || || |||||| ||||||||||||||||||||||||||||||||     
4010017 gtgtagaaaaaag-tttttctttcaaaaatgttcttccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaat 4010115  T
207 ttcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    || ||||| ||| |||| | | |||||||||||||||||||| |||||| ||||||||||    
4010116 tttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatgccccaaattc 4010175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 3801509 - 3801765
Alignment:
9 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagt 108  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||     
3801509 atcatcaagatcaataagaaccttcatacggccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaatagg 3801608  T
109 gtagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaactt 208  Q
     |||||||||||| ||| |        || | || |  |||||||||||||   |||||| |||| || |||||||||||| ||||||||| ||| | ||    
3801609 ttagaaaaaagct-tttctttttaaattgttattccacgccttcctaattccaaactcacatttgacataaaacaacaaccatcatattcaaagcgattt 3801707  T
209 cggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
     ||||| | | |||||| | ||||||||||||||||||||| ||||||||||||||||    
3801708 tggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaaattc 3801765  T

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Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 4218566 - 4218677
Alignment:
9 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagt 108  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||   ||||||     
4218566 atcatcaagaacaataagaaccttcatacggtcaatccttctatgaatattattagacaacccatttgatgaatcgattttcacatcttcatttaatagg 4218665  T
109 gtagaaaaaagc 120  Q
     |||||||||||    
4218666 ttagaaaaaagc 4218677  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 3809940 - 3810195
Alignment:
10 tcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagtg 109  Q
    ||||||||||| |||||||||||||| ||||||||||  |||| ||||| |  || ||||| |||||||| ||| ||||||||||||||||| ||||||     
3809940 tcatcaagaacgataagaaccttcatgcggccaatccgcctctcaatatcactaggcaaccaatttggtgtatcaattttcacatcttctgccaatagtt 3810039  T
110 tagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttc 209  Q
    |||||||||| |  ||||        | |  || | || |||  ||| || ||||| |||||| |||| ||||||||||| ||||||||||| ||| ||     
3810040 tagaaaaaagtttattttttaaagaat-ccattccatgtcttgttaactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaattt 3810138  T
210 ggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    ||| | | | |||||  | ||||||||||||||||||||| ||||||||||||||||    
3810139 ggtcaaataattcttttgcaatagttgtcttgccaataccacccataccccaaattc 3810195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 3987069 - 3987174
Alignment:
161 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 260  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | || ||||| ||| |||||| | |||||||||||||||||| ||   ||||||||    
3987069 tcactcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggcatacccc 3987168  T
261 aaattc 266  Q
    ||||||    
3987169 aaattc 3987174  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 4218719 - 4218822
Alignment:
163 actcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaa 262  Q
    |||||| |||| || |||||||||||| ||||||||||| ||| || ||| | | | |||||  | ||||||||||||||||||||| ||||||||||||    
4218719 actcacatttgacataaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaa 4218818  T
263 attc 266  Q
    ||||    
4218819 attc 4218822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 3986916 - 3987028
Alignment:
7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    |||||||||||||  |||||||||||||| || ||||| | ||||| ||||| |   ||||||| |||||||| ||| |||||||||||||| || ||||    
3986916 acatcatcaagaatgataagaaccttcatgcgtccaattcgtctctcaatatcactggacaacctatttggtgtatcaattttcacatcttcggccaata 3987015  T
107 gtgtagaaaaaag 119  Q
     | ||| ||||||    
3987016 ttttagtaaaaag 3987028  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 3817658 - 3817763
Alignment:
161 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 260  Q
    ||||| |||||| |||| ||||||||||| ||||| || || | | || || || | | |||||| | ||||||||||||||||||||| ||||| ||||    
3817658 tcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccc 3817757  T
261 aaattc 266  Q
    ||||||    
3817758 aaattc 3817763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 3919806 - 3919701
Alignment:
161 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 260  Q
    ||||| |||||| |||| ||||||||||| ||||| || || | | || || || | | |||||| | ||||||||||||||||||||| ||||| ||||    
3919806 tcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccc 3919707  T
261 aaattc 266  Q
    ||||||    
3919706 aaattc 3919701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 3933030 - 3932925
Alignment:
161 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 260  Q
    ||||| |||||| |||| ||||||||||| ||||| || || | | || || || | | |||||| | ||||||||||||||||||||| ||||| ||||    
3933030 tcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccc 3932931  T
261 aaattc 266  Q
    ||||||    
3932930 aaattc 3932925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 3933172 - 3933121
Alignment:
6 gacatcatcaagaacaataagaaccttcatacggccaatccttctctgaata 57  Q
    |||||||||||||||||||||||| ||||| ||||| |||| ||||| ||||    
3933172 gacatcatcaagaacaataagaactttcatgcggccgatccgtctctcaata 3933121  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 3817516 - 3817562
Alignment:
6 gacatcatcaagaacaataagaaccttcatacggccaatccttctct 52  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||    
3817516 gacatcatcaagaacgataagaaccttcatgcggctaatccgtctct 3817562  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 3919948 - 3919902
Alignment:
6 gacatcatcaagaacaataagaaccttcatacggccaatccttctct 52  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||    
3919948 gacatcatcaagaacgataagaaccttcatgcggctaatccgtctct 3919902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 13397871 - 13398127
Alignment:
7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||||||||| ||||||||||||||||    
13397871 acatcatcaagaacaataagaaccttcatatggccaatccttctctgaatataactaggcaacccatttgatgaatcgatttttacatcttctgctaata 13397970  T
107 gtgtagaaaaaagctctttttnnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaac 206  Q
    ||||||||| ||||| ||| |         ||| || | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||     
13397971 gtgtagaaacaagct-tttcttttaaaaacgctattccatgccttcctaattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaa 13398069  T
207 ttcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaat 264  Q
    || | ||| ||| |||||| | |||||||||||| |||||||||||||||||||||||    
13398070 tttgattaaaaatttcttcggcaatagttgtctttccaatacctcccataccccaaat 13398127  T

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Target: scaffold1360 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 1966 - 1920
Alignment:
220 ttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    |||||| | ||||||||||||||||||||| ||||| ||||||||||    
1966 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc 1920  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 7023445 - 7023411
Alignment:
6 gacatcatcaagaacaataagaaccttcatacggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
7023445 gacatcatcaagaacaataagaaccttcatgcggc 7023411  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 7075419 - 7075453
Alignment:
6 gacatcatcaagaacaataagaaccttcatacggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
7075419 gacatcatcaagaacaataagaaccttcatgcggc 7075453  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 7092860 - 7092906
Alignment:
6 gacatcatcaagaacaataagaaccttcatacggccaatccttctct 52  Q
    |||||| |||||||||||||||||||||||||| | |||||| ||||    
7092860 gacatcgtcaagaacaataagaaccttcatacgacgaatcctcctct 7092906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 7036542 - 7036509
Alignment:
7 acatcatcaagaacaataagaaccttcatacggc 40  Q
    ||||||||||||||||||||||||||||| ||||    
7036542 acatcatcaagaacaataagaaccttcatgcggc 7036509  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 7069128 - 7069181
Alignment:
213 tataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    |||| |||||||| | |||||||||||| |||||||| | ||||||||||||||    
7069128 tatatacttcttctgcaatagttgtctttccaataccactcataccccaaattc 7069181  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 7075639 - 7075687
Alignment:
218 acttcttcagtaatagttgtcttgccaatacctcccataccccaaattc 266  Q
    |||||||||| ||||||||| || |||||||||  ||||||||||||||    
7075639 acttcttcagcaatagttgttttaccaatacctggcataccccaaattc 7075687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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