View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_35 (Length: 250)
Name: NF20083_high_35
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40353541 - 40353778
Alignment:
| Q |
1 |
tcacaccttggtctatcattatcttactcaacattatcggataatagatcatatttatgttactcaaattacccataactgtgtccaaaaacagcagtga |
100 |
Q |
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| T |
40353541 |
tcacaccttggtctatcattatcttactcaacattattggataatagatcatatttatgttactcaaattacacataactgtgtccaaaaacagcagtga |
40353640 |
T |
|
| Q |
101 |
caaatttacctttttgatctttagagtgttgtaaatacaaaagttgtgtaggtttgagactcggtattcatcttggtcacattgtatgaatatcttctag |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
40353641 |
caaatttacctttttgttctttagagtgttgtaaatacaaaagttgtgtaggtttgagactcggcattcatcttggtcacattgtatgaatatcttcttg |
40353740 |
T |
|
| Q |
201 |
ataaagtaataaagaagaccatgatttgctttcatctg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40353741 |
ataaagtaataaagaagaccatgatttgctttcatctg |
40353778 |
T |
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