View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_36 (Length: 250)
Name: NF20083_high_36
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38386972 - 38386734
Alignment:
| Q |
1 |
tagcaactcaactccttgctcaaatagaatacaccaaaataataaatattttggattagttttatcattatatagtggacattttagatgtatttgattc |
100 |
Q |
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| T |
38386972 |
tagcaactcaactccttgctcaaatagaatacaccaaaataataaatattttggattagttttatcattatatagtagaca-tttagatgtatttgattc |
38386874 |
T |
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| Q |
101 |
caattctcaaaatgaattttatatatgccaattggcgataaaaaactgaaatattgttaggtgagggttttcctgtaa-nnnnnnngtttctatgtaaac |
199 |
Q |
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| T |
38386873 |
caattctcaaaatgaattttttatatgccaattggcgataaaaaactgaaa---tgttaggtgagggttttcctgtaattttttttgtttttatgtaaac |
38386777 |
T |
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| Q |
200 |
atttcctgcggattttacttgggattttgttatgtcctttgct |
242 |
Q |
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| T |
38386776 |
atttcctgcggattttccttgggattttgttacgtcttttgct |
38386734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 24674242 - 24674315
Alignment:
| Q |
35 |
caaaataataaatattttggattagttttatcattatatagtggacattttagatgtatttgattccaattctcaa |
110 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||||||| |
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| T |
24674242 |
caaaataataaatattttggatta-ttttatcattatatagtgggca-tttagatgtattcgattccaattctcaa |
24674315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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