View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_42 (Length: 241)
Name: NF20083_high_42
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1330221 - 1329986
Alignment:
| Q |
1 |
aactagtaacctttgcttcttctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagta |
100 |
Q |
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| T |
1330221 |
aactagtaacctttgcttcttctccatctctgacatttgaacgtaagacggcggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagta |
1330122 |
T |
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| Q |
101 |
gaattaactccagttcctgatgttggtggtgctggcaatgctagcattgctggccttccggctgaaccaagtgctacactgctagcacttccactgcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1330121 |
gaattaactccagttcctgatgttggtggtgctggcaatgctagcattgctggccttccggctgaaccaagtgctacactgctagcacttccactgccac |
1330022 |
T |
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| Q |
201 |
catatcccactccttgcatggctgcattcatctctc |
236 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
1330021 |
catatcccactccttgcatggctgcattcatttctc |
1329986 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 1925753 - 1925689
Alignment:
| Q |
21 |
tctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagctgcaaatggatct |
85 |
Q |
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|||||||||||||||||||||| |||| |||||||| | | || ||| ||||||||||||||| |
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| T |
1925753 |
tctccatctctgacatttgaacataagctggtggtgctacaagcattgatgctgcaaatggatct |
1925689 |
T |
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