View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_high_49 (Length: 219)
Name: NF20083_high_49
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27493833 - 27493647
Alignment:
| Q |
18 |
agtccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactttactataattgatctatctc |
117 |
Q |
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| T |
27493833 |
agtccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactttactatcattgatctatctc |
27493734 |
T |
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| Q |
118 |
tttcaatg---nnnnnnnaattaattcctcaattattatattcatccctcttatctaaagtgtattaattaattcattatttgttta |
201 |
Q |
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| T |
27493733 |
tttcattgtttttttttttattaattcctcaattattatatccatccctcttatctaaagtgtattaattaattcattatttattta |
27493647 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 479546 - 479615
Alignment:
| Q |
28 |
tatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactt |
97 |
Q |
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| T |
479546 |
tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtactt |
479615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 466596 - 466672
Alignment:
| Q |
18 |
agtccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggta |
94 |
Q |
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| T |
466596 |
agtccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta |
466672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 474071 - 474139
Alignment:
| Q |
27 |
gtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtac |
95 |
Q |
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| T |
474071 |
gtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtac |
474139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 445824 - 445865
Alignment:
| Q |
46 |
atgcttttgcaaccatttttcttgctcctgttgcttatttat |
87 |
Q |
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| T |
445824 |
atgcttttgcaaccatttttcttgctccaattgcttatttat |
445865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 454908 - 454956
Alignment:
| Q |
46 |
atgcttttgcaaccatttttcttgctcctgttgcttatttatcagggta |
94 |
Q |
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| T |
454908 |
atgcttttgcaaccattcttcttgctcccattgcttatttatctgggta |
454956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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