View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_high_8 (Length: 551)
Name: NF20083_high_8
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 545
Target Start/End: Complemental strand, 43002364 - 43001839
Alignment:
| Q |
19 |
gctactaatagaataccaaagaaaacaaacatatgccaaaaccaagaaactgtcatgacaggaacaaaacaagtgcagtactctaccttccccattccac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43002364 |
gctactaatagaataccaaagaaaacaaacat--gccaaaaccaagaaactgtcatgacaggaacaaaacaagtgcagtactctaccttccccattccac |
43002267 |
T |
|
| Q |
119 |
ataaagtatcatttaaatctccttaaaacattgatatgcactactatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
43002266 |
ataaagtatcatttaaatctccttaaaacattggtatgcactactatacacacttttattatggcatgtaacctcaattattcaacactcaccctctcat |
43002167 |
T |
|
| Q |
218 |
ttaccaactatatatgtatatataattcaagctataccgtgtgacacattgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43002166 |
ttaccaactatatatgtatatataattcaaggtataccgtgtgacacattgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgc |
43002067 |
T |
|
| Q |
318 |
ctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43002066 |
ctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaat |
43001967 |
T |
|
| Q |
418 |
tctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaactagtaatcaactcattcacactagtatttccatacgatgt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43001966 |
tctaaagaaactaattccatttctcttcatccatatttgttagcttcacaaaacttgaactagtaatcaactcattcacactagtatttctatacgatgt |
43001867 |
T |
|
| Q |
518 |
cgcaactaatgatccactcctttgcttc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43001866 |
cgcaactaatgatccactcctttgcttc |
43001839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 179 - 545
Target Start/End: Complemental strand, 5512549 - 5512182
Alignment:
| Q |
179 |
atggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatataattcaagctataccgtgtgacacattgcacaagcct |
277 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||| || ||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
5512549 |
atggcatgtaacctcaattattcaacattcacactttcacttaccaactatatatctatatataattcaaggtatacggtgtgacacattgcacagacct |
5512450 |
T |
|
| Q |
278 |
ctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttct |
377 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
5512449 |
ttaaaagtttattgtttcacacaatattcatttataatgcctctaaaactggcatgatgttccaagtctttgtctctgcctctttcccaaattcctttct |
5512350 |
T |
|
| Q |
378 |
ttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaac |
477 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
5512349 |
ttgcaattaacaaaagctgggaccaataacctttgaaaattctcaagaaactggttccatttctcttcatccatatctgtcagcttcacaaaacttgaac |
5512250 |
T |
|
| Q |
478 |
tagtaatcaactcattcacactagtatttccatacgatgtcgcaactaatgatccactcctttgcttc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
5512249 |
tagtaatcaactcattcacactagtatttccagatgatgtcccaactaatgatccactcctttgcttc |
5512182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 2773092 - 2773190
Alignment:
| Q |
163 |
tatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
258 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2773092 |
tatacacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 2773265 - 2773363
Alignment:
| Q |
163 |
tatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
258 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2773265 |
tatacacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University