View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_11 (Length: 458)
Name: NF20083_low_11
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 55173690 - 55173242
Alignment:
| Q |
1 |
tgtcaaaaattatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173690 |
tgtcaaaaattatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattca |
55173591 |
T |
|
| Q |
101 |
acttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggagttccgtggatcatgtgcaagcagaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55173590 |
acttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacatcggagttccgtggatcatgtgcaagcagaag |
55173491 |
T |
|
| Q |
201 |
gatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatc |
300 |
Q |
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| T |
55173490 |
gatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatc |
55173391 |
T |
|
| Q |
301 |
aatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagag |
400 |
Q |
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| T |
55173390 |
aatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagag |
55173291 |
T |
|
| Q |
401 |
tatttggtgatccagtatcacagagatctgctgaagatattgccttctc |
449 |
Q |
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| T |
55173290 |
tatttggtgatccagtatcacagagatctgctgaagatattgccttctc |
55173242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 27721586 - 27721690
Alignment:
| Q |
291 |
ttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgct |
390 |
Q |
| |
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||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| |||| | ||||||||||||| ||||| ||| |
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| T |
27721586 |
ttggcagattaatgcatgcaatggaaggcactgtggtgatacctttacaggtccaaacaaaccatacaaacctttcatatggactgaaaactggactgct |
27721685 |
T |
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| Q |
391 |
cagta |
395 |
Q |
| |
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||||| |
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| T |
27721686 |
cagta |
27721690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 27721147 - 27721296
Alignment:
| Q |
75 |
attgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggag |
174 |
Q |
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||||| |||||||||||||| || |||||||||||||||| | ||||||| ||||||||||||||| ||||| |||||||| | | | | |||| |
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| T |
27721147 |
attgagaatgagtacaaccacatccaacttgcttatgaagctgatggagataattatgttcagtgggctgcaaaaatggcagtttcactatataatggag |
27721246 |
T |
|
| Q |
175 |
ttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
224 |
Q |
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|||| ||| ||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
27721247 |
ttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt |
27721296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 27720986 - 27721035
Alignment:
| Q |
21 |
atgaaagatgagaagctctttgctccccaaggaggccccatcatcttggc |
70 |
Q |
| |
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|||||||| || || ||||||||||| ||||||||||| ||||||||||| |
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| T |
27720986 |
atgaaagaagaaaaactctttgctcctcaaggaggccctatcatcttggc |
27721035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
| Q |
171 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
224 |
Q |
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|||||||||||||||||||||||||| | |||||||| ||||| || |||||| |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt |
42989290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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