View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_13 (Length: 430)
Name: NF20083_low_13
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 273
Target Start/End: Original strand, 33621032 - 33621271
Alignment:
| Q |
34 |
acaagccatgcatgatgcggccattaaataataaatgataatgcaacttgtcacaatttagtccaaggatttaacacaagaaagaaaagaatctgtaaaa |
133 |
Q |
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|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
33621032 |
acaagctatgcatgatgcgctcactaaataataaatgataatgcaacttgtcacaatttaatccaaggatttaacacgagaaagaaaagaatctgtaaaa |
33621131 |
T |
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| Q |
134 |
acatatcaattcacaaacatattttggctaatcatacatgaggtattttgtagttactatttggaagaattacatatgctgtcactgtcacatatgannn |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33621132 |
acatatcaattcacaaacatattttggctaatcatacatgaggtattttgtagttactatttggaagaattacatatgctgtcactgtcacatatgattt |
33621231 |
T |
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| Q |
234 |
nnnngtttcttgtgaacaaatctttcatttttattctttc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33621232 |
ttttgtttcttgtgaacaaatctttcatttttattctttc |
33621271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 33621289 - 33621401
Alignment:
| Q |
302 |
actgttttcccatgtcannnnnnnaaatgaaataatnnnnnnnttgcgctgtccatttttcagtatctcatcccgtgaatggtagctctacataaaaaat |
401 |
Q |
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| T |
33621289 |
actgttttcccatgtcatttttttaaatgaaataataaaaaaattgctctgtccattttccagtatctcatcccgtgattggtagctctacataaaaaaa |
33621388 |
T |
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| Q |
402 |
aattggacggtca |
414 |
Q |
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| T |
33621389 |
aattggacggtca |
33621401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 272
Target Start/End: Original strand, 31404053 - 31404291
Alignment:
| Q |
34 |
acaagccatgcatgatgcggccattaaataataaatgataatgcaacttgtcacaatttagtccaaggatttaacacaagaaagaaaagaatctgtaaaa |
133 |
Q |
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| T |
31404053 |
acaagctatgcatgatgcgctcactaaataataaatgataatgcaacttgtcacaatttaatccaaggatttaacacgagaaagaaaagaatctgtaaaa |
31404152 |
T |
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| Q |
134 |
acatatcaattcacaaacatattttggctaatcatacatgaggtattttgtagttactatttggaagaattacatatgctgtcactgtcacatatgannn |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31404153 |
acatatcaattcacaaacatattttggctaatcatacatgaggtattttgtagttactatttggaagaattacatatgctgtcactgtcacatatgattt |
31404252 |
T |
|
| Q |
234 |
nnnngtttcttgtgaacaaatctttcatttttattcttt |
272 |
Q |
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| T |
31404253 |
ttttgtttcttgtgaacaaatctttcatttttattcttt |
31404291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 31382023 - 31382196
Alignment:
| Q |
67 |
aatgataatgcaacttgtcacaatttagtccaaggatttaacacaagaaagaaaagaatctgtaaaaacata----------tcaattcacaaacatatt |
156 |
Q |
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| T |
31382023 |
aatgataatataacttgtcacaatttaatccaaggatttaacacgagaaagaaaataatctataagaacataggaaatttgatcaatcgacaatcatatt |
31382122 |
T |
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| Q |
157 |
ttggctaatcatacatgaggtattttgtagttactatttggaagaattacatatgctgtcactgtcacatatga |
230 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31382123 |
ttgactaatcatacatgaggtattttgtacttactatttggaagaattacatatgctgtcactgtcacaaatga |
31382196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 31404330 - 31404442
Alignment:
| Q |
302 |
actgttttcccatgtcannnnnnnaaatgaaataatnnnnnnnttgcgctgtccatttttcagtatctcatcccgtgaatggtagctctacataaaaaat |
401 |
Q |
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||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
31404330 |
actgttttcccatgtcatttttttaaatgaaataataaaaaaattgctctgtccattttccagtatctcatcccgtgattggtagctctacataaaaaaa |
31404429 |
T |
|
| Q |
402 |
aattggacggtca |
414 |
Q |
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| T |
31404430 |
aattggacggtca |
31404442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 31369812 - 31369941
Alignment:
| Q |
67 |
aatgataatgcaacttgtcacaatttagtccaaggattt--aacacaaga--aagaaaagaatctgtaaaaacata----------tcaattcacaaaca |
152 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| ||||| ||| ||||||||||||| |||||| || ||||| ||||| || |
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| T |
31369812 |
aatgataatgtaacttgtcacaatttaatccaaggatttttaacacgagagaaagaaaagaatctacaaaaacgtaggaaatttgatcaatacacaatca |
31369911 |
T |
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| Q |
153 |
tattttggctaatcatacatgaggtatttt |
182 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31369912 |
tattttggctaatcatacatgaggtatttt |
31369941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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