View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_14 (Length: 429)
Name: NF20083_low_14
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 53676229 - 53676596
Alignment:
| Q |
10 |
aaccttgcaaggttgccacatagccttcattatttttgacatacacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtaga |
109 |
Q |
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| T |
53676229 |
aaccttgcaaggttgccacatagccttcattatttttgacatacacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtaga |
53676328 |
T |
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| Q |
110 |
aataatattattgtccaattttaaagtttatcttttaacattttatttattttctcttcactgcgtgtttcttagcttctacaaagagggttaagtgtga |
209 |
Q |
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| T |
53676329 |
aataatattattgtccaattttaaagtttatcttttaacattttatttattttctcttgactgcgtgtttcttagcttctacaaagaggtttaagtgtca |
53676428 |
T |
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| Q |
210 |
caaacaatattttaaaactaagttatttgattcattgagtctctctgatataaagtttacaaattacaagtgatatttacagacaaatgtgtttgagcct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676429 |
caaacaatattttaaaactaagttatttgattcattgagtctctctgatatatagtttacaaattacaagtgatatttacagacaaatgtgtttgagcct |
53676528 |
T |
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| Q |
310 |
aaatcctattagccatgatcatgacctataaagatcgtgtcctaattgcttctattcggctaacctta |
377 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
53676529 |
aaatcctattagccatgatcatgacatataaagatcgtgtcctaattgctattattcggctaacctta |
53676596 |
T |
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