View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_low_17 (Length: 406)
Name: NF20083_low_17
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_17 |
 | |
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| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 11536956 - 11536549
Alignment:
| Q |
1 |
aggcatttcgctaagcacaaaagttgtgcttagtgagcaaggttgatttaaggaaaaatattcgaagaacggctggttttttcctcatttgaagaaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
11536956 |
aggcatttcgctaagcacaaaagttgtgcttagtgagcaaggtcgatttaaggaaaaatatttgaagaacggctggttttttcctcctttaaagaaacct |
11536857 |
T |
|
| Q |
101 |
caattttctaagcacgctttccacacatagcgaatctgtaactttagaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11536856 |
caattttctaagcacgctttccacacatagcgaatctgtaactttagaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacc |
11536757 |
T |
|
| Q |
201 |
taaaatagaataaagagagaacgagggaaaagagtggttggaggcattggaggacgaacgatgcttagaactccaagattcaacaactcttcaatgttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11536756 |
taaaatagaataaagagagaacgagggaaaagagtggttggaggcattggaggacgaacgatgcttagaactccaagattcaacaactcttcaatgttag |
11536657 |
T |
|
| Q |
301 |
tcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaata--cttagtggatggttgtatatgat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11536656 |
tcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaatactcttagtggatggttgtatatgat |
11536557 |
T |
|
| Q |
399 |
atatgttc |
406 |
Q |
| |
|
|||||||| |
|
|
| T |
11536556 |
atatgttc |
11536549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 32067586 - 32067486
Alignment:
| Q |
275 |
aagattcaacaactcttcaatgttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaat |
374 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||| |||| || | ||||| |||||||| |||||||| |
|
|
| T |
32067586 |
aagattcaacaactctcttttgttagtcatgcaacccatgagtaactaaactctctcttgtgttgtgatttgatat-aaataactaggaatatatgtaat |
32067488 |
T |
|
| Q |
375 |
ac |
376 |
Q |
| |
|
|| |
|
|
| T |
32067487 |
ac |
32067486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 132 - 353
Target Start/End: Original strand, 1467252 - 1467471
Alignment:
| Q |
132 |
gaatctgtaactttagaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacctaaaatagaataaagagagaacgagggaaaa |
231 |
Q |
| |
|
||||||| ||||| ||||||| | ||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||| ||||||||| ||||| | |
|
|
| T |
1467252 |
gaatctgcaacttcggaaactcaacaaatagaagtgcaagtcatttgtaaactcaatcaattgtaaacccaaaatagaat--agagagaacatgggaaga |
1467349 |
T |
|
| Q |
232 |
gagtggttggaggcattggaggacgaacgatgcttagaactccaagattcaacaactcttcaatgttagtcatgcgacacatgggtaactaaactctctc |
331 |
Q |
| |
|
||||||||| || ||||||| | || ||||||| | |||||||||||||||| | |||||||||||||||||||||| || ||||| | ||| |
|
|
| T |
1467350 |
gagtggttgaagccattggaatgccaaggatgcttggtactccaagattcaacacatacctgatgttagtcatgcgacacatggctatctaaattttctt |
1467449 |
T |
|
| Q |
332 |
ttgtgttaggattggaagtaaa |
353 |
Q |
| |
|
||||||| ||||| || ||||| |
|
|
| T |
1467450 |
ttgtgttgggatttgatgtaaa |
1467471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 319612 - 319458
Alignment:
| Q |
129 |
agcgaatctgtaactttagaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacctaaaatagaataaagagagaacgaggga |
228 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||||| || ||||||||||||| ||||||||||| ||| |||||||||| ||||||||| || | |
|
|
| T |
319612 |
agcgaatctgcaacttcagaaactctataaataaaagtgcaaatcatttgtaaactcaatcaattgtaaacccaaaatagaat--agagagaacaagagc |
319515 |
T |
|
| Q |
229 |
aaagagtggttggaggcattggaggacgaacgatgcttagaactccaagattcaaca |
285 |
Q |
| |
|
| ||||||| ||||| |||||||| | || ||||||| ||||| |||||||||||| |
|
|
| T |
319514 |
agagagtggctggagccattggagagccaaggatgctttgaactacaagattcaaca |
319458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 318889 - 318835
Alignment:
| Q |
293 |
aatgttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattgga |
347 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| | |||||| |
|
|
| T |
318889 |
aatgttagtcatgcgacacatggctaactaaattctctcttgtgttggaattgga |
318835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 17631607 - 17631790
Alignment:
| Q |
11 |
ctaagcacaaaagttgtgcttagtgagcaaggttgatttaaggaaaaatattcgaagaacggctggttttttcctcatttgaagaaacctcaattttcta |
110 |
Q |
| |
|
||||||||||||| |||||| ||| |||||| ||| |||||||||||| |||||| |||||||||| || |||||||||| | ||| |||| |
|
|
| T |
17631607 |
ctaagcacaaaaggcatgcttaatgatcaaggtaaattaaaggaaaaatatattaagaacaattggttttttcatcccttgaagaaacttggattctcta |
17631706 |
T |
|
| Q |
111 |
agcacgctttccacacatagcgaatctgtaactttagaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattg |
194 |
Q |
| |
|
|||| |||||||| | |||| |||||| ||||| ||||||||| |||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
17631707 |
agcatgctttccatgcttagcaaatctgcaacttcagaaactctctaaatagaagtgtaagtcatttctaaatgtaatcaattg |
17631790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 21822890 - 21822956
Alignment:
| Q |
310 |
acatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaatact |
377 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
21822890 |
acatgggtaattaaactctctcttttgttaggattggatgt-gaatagctaggaatctatgtagtact |
21822956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 406
Target Start/End: Complemental strand, 12840721 - 12840572
Alignment:
| Q |
260 |
gatgcttagaactccaagattcaacaactcttcaatgttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagct |
359 |
Q |
| |
|
||||||| |||||| ||||||||||| ||| ||||| |||| | |||||||||||| ||||||| |||||||||| |||||||| || |||||| | |
|
|
| T |
12840721 |
gatgcttggaactctaagattcaacacttctcttatgtttttcattcaacacatgggtaagtaaactccctcttgtgttgggattggatgt-aaataggt |
12840623 |
T |
|
| Q |
360 |
aggaatctatgtaata--cttag--tggatggttgtatatgatatatgttc |
406 |
Q |
| |
|
|||| |||| ||||| ||||| ||| |||||||||||||| ||||||| |
|
|
| T |
12840622 |
aggagcctatataataatcttagtctggctggttgtatatgatttatgttc |
12840572 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 7566625 - 7566528
Alignment:
| Q |
273 |
ccaagattcaacaactcttcaatgttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgta |
372 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||| |||| ||||||||||||||||| |||||| |||||||| || ||||||||||||| ||||||| |
|
|
| T |
7566625 |
ccaacattcaacaactctcctttgttagtcatgt-acaccatggtaactaaactctctcctgtgttgggattggatgt-aaatagctaggaacctatgta |
7566528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 24465488 - 24465587
Alignment:
| Q |
140 |
aactttagaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacctaaaatagaataaagagagaacgagggaaaagagtggtt |
239 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| |||||||| || ||| |||||| | |||||||| ||||| | ||||||||| |
|
|
| T |
24465488 |
aactttataaactctataaatagaagtgcaagtcatttgtaaactcaatcaattttaaacccaaaata----atagagagaatgagggtagagagtggtt |
24465583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 24465611 - 24465693
Alignment:
| Q |
294 |
atgttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaatact |
377 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| | |||| | || |||||| || |||||| ||||||||| |
|
|
| T |
24465611 |
atgttagtcatgcgacacatggataacttaactctctcttgtgttggaattgaatgt-aaatagataagaatctttgtaatact |
24465693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 15304812 - 15304747
Alignment:
| Q |
311 |
catgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaatact |
377 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || |||||| ||||| |||||||||| |||| |
|
|
| T |
15304812 |
catgggtaactaaactctcttttgtgttaggatttgatgtaaaa-agctacaaatctatgtagtact |
15304747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 34744571 - 34744621
Alignment:
| Q |
146 |
agaaactctataaatagaagtgaaagtcatttgtaaacttaatcaattgta |
196 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
34744571 |
agaaactctataaatagaagtgcaagtcatttgtatatgtaatcaattgta |
34744621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 14526591 - 14526650
Alignment:
| Q |
312 |
atgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgta |
372 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||| || |||||| ||||| |||||||| |
|
|
| T |
14526591 |
atgggtaactaaaccctcttttgtgttgggattggatgt-aaatagataggattctatgta |
14526650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 9436 - 9622
Alignment:
| Q |
155 |
ataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacctaaaatagaataaagagagaacgagggaaaagagtggttggaggcattggagga |
254 |
Q |
| |
|
||||||| |||||||| | ||| ||||| ||||||||||| || || |||||||| |||| |||| |||||| |||||||||| || | | |||| |
|
|
| T |
9436 |
ataaatataagtgaaattaattataaaactcaatcaattgtaagccaaatatagaatatagagtgaacaagggaagagagtggttgaagcctctagaggt |
9535 |
T |
|
| Q |
255 |
cgaacgatgcttagaactccaagattcaacaactcttcaatgttagtcatgcgacacatgggtaactaaactctctcttgtgttagg |
341 |
Q |
| |
|
| || || |||| |||||| ||||||||||||||||| ||||| |||| |||| |||||| ||||||||||| |||||||||| |
|
|
| T |
9536 |
ccaaggaagcttggaactctaagattcaacaactctttgatgttgttcatctgacaaatgggtcactaaactctcatttgtgttagg |
9622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 22959394 - 22959311
Alignment:
| Q |
151 |
ctctataaatagaagtgaaagtcatttgtaaacttaatcaattgtacacctaaaatagaataaagagagaacgagggaaaagag |
234 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||| | | |||| ||| |||||||||||||||| |||| |
|
|
| T |
22959394 |
ctctataaatagaagtgcaagtcatttgtaaatataatcaattgtaaattcacaatattatagagagagaacgagggaagagag |
22959311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 21557355 - 21557275
Alignment:
| Q |
296 |
gttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaatactt |
378 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
21557355 |
gttagtcatgcgataaatgagtaactaaactctta--tgtgttgagattgaatgtaaaatagttaggaatctatgtaatactt |
21557275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 8718147 - 8718105
Alignment:
| Q |
311 |
catgggtaactaaactctctcttgtgttaggattggaagtaaa |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
8718147 |
catgggtaactaaactctcttttgtgttgggattggatgtaaa |
8718105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 3238 - 3343
Alignment:
| Q |
271 |
ctccaagattcaacaactcttcaatgttagtcatgcgacacatgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatg |
370 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| |||| |||||||||||||||| ||| || |||| |||||||| || |||||| ||| |||||||| |
|
|
| T |
3238 |
ctccaacattcatcaactcttctttgttagttatgcatatcatgggtaactaaactttcttttatgttgggattggatgt-aaataggtagaaatctatg |
3336 |
T |
|
| Q |
371 |
taatact |
377 |
Q |
| |
|
|| |||| |
|
|
| T |
3337 |
tagtact |
3343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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