View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_low_18 (Length: 401)
Name: NF20083_low_18
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 38850848 - 38850462
Alignment:
| Q |
1 |
ttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850848 |
ttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaac |
38850749 |
T |
|
| Q |
101 |
atttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattggattt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38850748 |
atttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgaaaatcaattggattt |
38850649 |
T |
|
| Q |
201 |
tggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg-nnnnnnnngttgagtta |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||| ||||||||| |
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| T |
38850648 |
tggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagttaaggaagtagaagtatacattgtttttttttgttgagtta |
38850549 |
T |
|
| Q |
300 |
gttaattagagcttgagggttgttggtatgttatctaagatagaggactatactatatataggttagtttatagaatatgatatagg |
386 |
Q |
| |
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| T |
38850548 |
gttaattagagcttgagggttgttggtatgttatctaagatagaggactatactatatataggttagtttatataatatgatatagg |
38850462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 282
Target Start/End: Original strand, 38827299 - 38827576
Alignment:
| Q |
5 |
ggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacattt |
104 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||| ||||||| |||||||||||||||| |
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| T |
38827299 |
ggctacgttagaaaaccttaaggcgcaccttatgatcgagtttaaggcaagtgagcaaataagagcacacaatagaactgcaagtatcatcacaacattt |
38827398 |
T |
|
| Q |
105 |
gaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattggattttgga |
204 |
Q |
| |
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| ||||||||||||| |||||||| ||||| |||||||| || |||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38827399 |
gcatcaaattcacgaattccaaaatatgagttagttgaattatggttgtgtgtgagaacaggggagctggttggtgattgataatcaattggattttgga |
38827498 |
T |
|
| Q |
205 |
agagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38827499 |
agagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtagaagcatacattg |
38827576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 38841082 - 38841359
Alignment:
| Q |
3 |
atggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacat |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| | |
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|
| T |
38841082 |
atggctacgtttgaaaaccttaaggcacacctgataatggagtttaatgcaagtgagcaaataaaaacacataatatgactgcaagtatcatcacaactt |
38841181 |
T |
|
| Q |
103 |
ttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattggattttg |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| ||||| ||||||||| ||||| ||| ||||| |
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| T |
38841182 |
ttgaatcaaattcacgatctccaaaatttgagtctgttgaattatggttgtttgttaaagtaggggagttggttagtgattgatgatcaactgggttttg |
38841281 |
T |
|
| Q |
203 |
gaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacat |
280 |
Q |
| |
|
| ||||||||||||| |||| ||||| ||||||||||||| || | | ||| |||||| ||| ||||||||||||| |
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|
| T |
38841282 |
aatgagtaaccttcttatgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaatagaagcatacat |
38841359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 38865130 - 38865403
Alignment:
| Q |
5 |
ggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacattt |
104 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||| | ||||||| |
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|
| T |
38865130 |
ggctacgttagaaaaccttaaaccacaccttatgatggagtttaatgcaagtgagcaaataagagcacacaataaaactgcaagtatcattataacattt |
38865229 |
T |
|
| Q |
105 |
gaatcaaattcacgagctccaaaatttgagtctgttgaatt---gtgattgtttgttaacacaggggagctggttggtgattgataatcaattggatttt |
201 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| || ||| |||||||| ||| ||||| | ||| ||||||||| |||||||| | || |
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|
| T |
38865230 |
gaatcgaattcacgagctccaaaatatgagtctgttgaattatggttattatttgttaaaacatgggagttagttagtgattgatgttcaattgggtctt |
38865329 |
T |
|
| Q |
202 |
ggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagca |
275 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||| |||||||||||| |
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|
| T |
38865330 |
gaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagca |
38865403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 38858822 - 38859094
Alignment:
| Q |
11 |
gtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatca |
110 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
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|
| T |
38858822 |
gtttgaaatccttaagaaacaccttatgatggagtttaatacaagtaaacaaataaaagcacataatagaactgcaattatcatcacaacatctgaatca |
38858921 |
T |
|
| Q |
111 |
aattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggtt---ggtgattgataatcaattggattttggaaga |
207 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||| ||||| || || ||||||| | || || ||||||||| ||||| ||| ||||| | || |
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|
| T |
38858922 |
aattcacgagctccgaactttgagtcggttgaattgttgttgttcgtgaaaacaggggggttgattttaagtgattgatgatcaactgggttttgaatga |
38859021 |
T |
|
| Q |
208 |
gtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacat |
280 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38859022 |
gtaaccttcttgtgtgagattccacaagaagctcatgtagaagtggtgaagtaaaagaagtagaagcatacat |
38859094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 38861716 - 38861979
Alignment:
| Q |
22 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagc |
121 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
38861716 |
ttaaggcacgccttatgataaagtttaatgcaaggggaccaataaaagcacataatacaactgcaagtatcatcacaacatttgaatcaaattcaggagc |
38861815 |
T |
|
| Q |
122 |
tccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggtt---ggtgattgataatcaattggattttggaagagtaaccttctt |
218 |
Q |
| |
|
|| ||||| |||||| ||||||||||| | ||||| || | | ||||| || || ||||||||| ||||| ||| ||||| | ||||||||||||| |
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|
| T |
38861816 |
tctaaaatatgagtcggttgaattgtggctatttgtgaaaatacgggagttgattttaagtgattgatgatcaactgggttttgaatgagtaaccttctt |
38861915 |
T |
|
| Q |
219 |
gtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg |
282 |
Q |
| |
|
||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
38861916 |
gtgtgagattccacaagaagttcatggagaagtggtgaagtaaaggaagtagaagcatacattg |
38861979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 38846919 - 38847154
Alignment:
| Q |
26 |
ggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagctcca |
125 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||| | ||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
38846919 |
ggcacaccttacaatggagtttaatgcaattgagcaaataatagcacacaataggacagaaactatcatcacaacatttgattcaaactcacgagctcca |
38847018 |
T |
|
| Q |
126 |
aaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtg |
225 |
Q |
| |
|
|||| |||| |||||||||| ||||| ||| || ||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
38847019 |
aaatacgagttagttgaattgttattgtgtgtgaa---------------------ttgatgatcaactgggttttggaagagtaaccttcttgtgtgtg |
38847097 |
T |
|
| Q |
226 |
attctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg |
282 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38847098 |
attctacaagaagctcatggaggagttgtgaagtaaaagaagtagaagcatacattg |
38847154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 38827599 - 38827655
Alignment:
| Q |
295 |
agttagttaattagagcttgagggttgttggtatgttatctaagatagaggactata |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |
|
|
| T |
38827599 |
agttagttaattagagcttgagggttgttgttatattatcctagacagaggactata |
38827655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 38859137 - 38859183
Alignment:
| Q |
302 |
taattagagcttgagggttgttggtatgttatctaagatagaggact |
348 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
38859137 |
taattagagcttgagggtttttggtatgttatcttagatagatgact |
38859183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 43666311 - 43666401
Alignment:
| Q |
22 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaa |
112 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||| ||||||| ||||||||||||||| | | || ||| |||||||||| |||||| |
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|
| T |
43666311 |
ttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataataggacagagagtaccataacaacatttgcatcaaa |
43666401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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