View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20083_low_28 (Length: 298)

Name: NF20083_low_28
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20083_low_28
NF20083_low_28
[»] chr2 (2 HSPs)
chr2 (158-239)||(27752108-27752189)
chr2 (257-288)||(27752065-27752096)
[»] chr7 (1 HSPs)
chr7 (19-97)||(12640988-12641067)
[»] chr5 (2 HSPs)
chr5 (19-90)||(3422708-3422779)
chr5 (108-138)||(3422808-3422838)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 27752189 - 27752108
Alignment:
Q  158 tgtgacctttcttatttgaaaagattatgcttctaggaccttcttctcaaaagcgtgatacaactatattataatacaagta 239  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27752189 tgtgacctttcttatttgaaaagattatgcttctaggaccttgttctcaaaagcgtgatgcaactatattataatacaagta 27752108  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 288
Target Start/End: Complemental strand, 27752096 - 27752065
Alignment:
Q  257 aaagaattattatgcaagtattgttacctttg 288  Q
    ||||||||||||||||||||||||||||||||    
T  27752096 aaagaattattatgcaagtattgttacctttg 27752065  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 12640988 - 12641067
Alignment:
Q  19 accattcccctcc-gacgacctgcttcctttgttgaagaatgatggttcagaaacttggttcctgagatcttaattctcg 97  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  12640988 accattcccctcctgacgacctgcttcctttgttgaagaatgatgcttcaggaacttggttcctgagatcttagttctcg 12641067  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 3422708 - 3422779
Alignment:
Q  19 accattcccctccgacgacctgcttcctttgttgaagaatgatggttcagaaacttggttcctgagatctta 90  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  3422708 accattcccccctgacgacctgcttcctttgttgaagaatgatgtttcaggaacttggttcctgagatctta 3422779  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 3422808 - 3422838
Alignment:
Q  108 tgtctttttcttgtttatttgcttctgtaac 138  Q
    |||||||||||||||||||||||||||||||    
T  3422808 tgtctttttcttgtttatttgcttctgtaac 3422838  T

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