View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_3 (Length: 591)
Name: NF20083_low_3
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 1330014 - 1329719
Alignment:
| Q |
1 |
cactccttgcatggctgcattcatttctccttgtttatacataccatccaacaataatgtatcaaagcctccacctaatgcaggctgctggtttcctaag |
100 |
Q |
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| T |
1330014 |
cactccttgcatggctgcattcatttctccttgtttatacataccatccaacaataatgtatcaaagcctccacctaatgcaggctgctggtttcctaag |
1329915 |
T |
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| Q |
101 |
tggctggttgattgtaccaacgctgtttcccaatctgcactctcgtcaaatgcatgccatggaagtgcttttattccaccttcacttgttgctggtgcag |
200 |
Q |
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| T |
1329914 |
tggctggttgattgtaccaacgctgtttcccaatctgcactctcatcaaatgcatgccatggaagtgcttttattccaccttcacttgttgctggtgcag |
1329815 |
T |
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| Q |
201 |
ccccatcaaataaagctaaggcaagtttgtccccatgttcttcagttgtcactctatcatctcctaagttcaacaaatcaccctcggtttgcacaa |
296 |
Q |
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| T |
1329814 |
ccccatcaaataaagctaaggctagtttgtccccatgttcttcagttgtcactctatcatctcctaagttcaacaaatcaccctcggtttgcacaa |
1329719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 346 - 582
Target Start/End: Complemental strand, 1329669 - 1329433
Alignment:
| Q |
346 |
ggctggttcctctggtggtggaagggccttgacttcattcatatcctcttccggttcaggttcgggttcgggttccttggcttcttcatccgaattgttc |
445 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329669 |
ggctggttcctctggtggtggaagggccttgactgcattcatatcctcttccggttcaggttcgggttcgggttccttggcttcttcatccgaattgttc |
1329570 |
T |
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| Q |
446 |
tcttcttgaacatcagctttattgctttgtgctagcatgttcttatctttgataaactcttccataacctctaacttctttggtgtgaccttatctatct |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329569 |
tcttcttgaacatcagctttattgctttgtgctagcatgttcttatctttgataaactcttccataacctctaacttctttggtgtgaccttatctatct |
1329470 |
T |
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| Q |
546 |
cagggtactcagaagagcgacaaattccaatattctt |
582 |
Q |
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| T |
1329469 |
cagggtactcagaagagcgacaaattccaatattctt |
1329433 |
T |
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