View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_33 (Length: 272)
Name: NF20083_low_33
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 20992655 - 20992912
Alignment:
| Q |
1 |
agcgtacaagaaatgggcaaagaaaatatcagaaaccaagccgccaactagtcctttacgaaggaagcaaaagtaagtttattaagcagagtttggcttt |
100 |
Q |
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| T |
20992655 |
agcgtacaagaaatgggcaaagaaaatatcagaaaccaagccgccaactagtcctttacgaaggaagcaaaagtaagtttatcaagtagagtttggcttt |
20992754 |
T |
|
| Q |
101 |
gttattgacactttaatgtaggtagaaataatcaagtgtttaaatcttctacagatcaagtaaggagccaaaaacagatttgtatgctatcatatcaaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20992755 |
gttattgacactttaatgtaggtataaataatcacgtgtttaaatcttctacagatcaagtaaggagccaaaaacagatttgtatgctatcatatcaaaa |
20992854 |
T |
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| Q |
201 |
cgacgagatgagaggaaagaccggtttgattctatgttctcgtcgctaatatcaaaat |
258 |
Q |
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| T |
20992855 |
cgacgagatgagaggaaagaccggtttgattctatgttctcgtctctaatatcaaaat |
20992912 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 36602182 - 36602098
Alignment:
| Q |
172 |
aaacagatttgtatgctatcatatcaaaacgacgagatgagaggaaagaccggtttgattctatgttctcgtcgctaatatcaaa |
256 |
Q |
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|||||||| ||| ||| ||||||||| |||| ||| |||||||||||| | ||||||||| |||||| |||| ||| ||||||| |
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| T |
36602182 |
aaacagatctgtgtgcaatcatatcacaacgccgaaatgagaggaaaggtcagtttgattcaatgttcgcgtctctagtatcaaa |
36602098 |
T |
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