View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_34 (Length: 272)
Name: NF20083_low_34
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 7655641 - 7655453
Alignment:
| Q |
52 |
actgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctg |
151 |
Q |
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| T |
7655641 |
actgcagggttcacatgtccaccagatatgtttgctccaacagaaacggcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagcag |
7655542 |
T |
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| Q |
152 |
gtgttgcagggccattattggtaagtttacctgccaaaataaccaacaatcattcattttactagcatcataataatgcatcaaaatggatg |
243 |
Q |
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| T |
7655541 |
gtgttgcagggccattattggtaagtttgcctgccaaaataaccaacaatcattcattttactagcatca---taatgcatcaaaatggatg |
7655453 |
T |
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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 52103075 - 52103223
Alignment:
| Q |
52 |
actgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctg |
151 |
Q |
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| T |
52103075 |
actgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgagataatgatgcaactatgagaccttcag |
52103174 |
T |
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| Q |
152 |
gtgttgcagggccattattggtaagtttacctgccaaaataaccaacaa |
200 |
Q |
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| T |
52103175 |
gagtggcagctccattgtttgtaagtttatctgccacaatagccaacaa |
52103223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 23339522 - 23339438
Alignment:
| Q |
55 |
gcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagcta |
139 |
Q |
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| T |
23339522 |
gcagggttgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagcta |
23339438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
58 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
107 |
Q |
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| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
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