View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_low_37 (Length: 255)
Name: NF20083_low_37
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_37 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 20992015 - 20992252
Alignment:
| Q |
18 |
aatatttcagaacattgtacaagaaggtacttgtttctgtatcttatcnnnnnnnattcctagtgccttgtatatgcttgttctcggtttgtttaacttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20992015 |
aatatttcagaacattgtacaagaaggtacttgtttatgtatcttatctttttttattcccagtgccttgtatacgcttgttctcggtttgtttaacttt |
20992114 |
T |
|
| Q |
118 |
gcaatttgtgctaataggtcactgaagctgatattgaggagtttgaagcaaactataggggatctgactctgagaaaactgatttaattagactttacaa |
217 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20992115 |
gtaattcgtgctaataggtcactgaagctgatattgaggagtttgaagcaaactataggggatctgactctgagaaaaatgatttaattagactttacaa |
20992214 |
T |
|
| Q |
218 |
ggaatgcaagggtaacatgaacaggtaataaagcattt |
255 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20992215 |
ggaatgcaagggtaatatgaacaggtaataaagcattt |
20992252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 36603186 - 36603065
Alignment:
| Q |
133 |
aggtcactgaagctgatattgaggagtttgaagcaaactataggggatctgactctgagaaaactgatttaattagactttacaaggaatgcaagggtaa |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||| ||| || |||||| | | |||||| || |
|
|
| T |
36603186 |
aggttactgaagctgatattgaggagtttgaagcaaactaccggggttctgactcagagaaaaatgatttgattgagctgtacaagaagtacaaggggaa |
36603087 |
T |
|
| Q |
233 |
catgaacaggtaataaagcatt |
254 |
Q |
| |
|
||||| |||||| |||||||| |
|
|
| T |
36603086 |
tatgaaaaggtaagaaagcatt |
36603065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University