View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20083_low_4 (Length: 584)

Name: NF20083_low_4
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20083_low_4
NF20083_low_4
[»] chr4 (4 HSPs)
chr4 (7-565)||(28954708-28955267)
chr4 (77-137)||(12634477-12634537)
chr4 (70-137)||(56461361-56461428)
chr4 (54-137)||(53171292-53171375)
[»] chr8 (3 HSPs)
chr8 (78-235)||(4700338-4700493)
chr8 (83-137)||(10950458-10950512)
chr8 (83-137)||(10958463-10958517)
[»] chr5 (2 HSPs)
chr5 (83-137)||(434087-434141)
chr5 (78-212)||(27337414-27337546)
[»] chr2 (1 HSPs)
chr2 (83-137)||(28225825-28225879)
[»] chr1 (1 HSPs)
chr1 (83-137)||(972450-972504)


Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 7 - 565
Target Start/End: Complemental strand, 28955267 - 28954708
Alignment:
Q  7 tcgaagaatattggtatctttatctattagggtttggggttaagatcgtactcgacactagacgcttctatgtacacttttgtggcttccagagctcaat 106  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28955267 tcgatgaaaattagtatctttatctattagggtttggggttaagatcgtactcggcactagacgcttctatgtacacttttgtggcttccagagctcaat 28955168  T
Q  107 cttgagtgctacaaaatcatattttgagagaaagcaaagataaatggtatggattttgattttgacaatgctttaggatgatctttgtggtacgatttca 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28955167 cttgagtgctacaaaatcatatattgagagaaagcaaagataaattgtattgattttgattttgacaatgcttttggatgatctttgtggtacgatttca 28955068  T
Q  207 aattttaactataacagttttattagtgagggcatggtccctcgaaaagcatgaaatgcttctttttagtaaa-gtgttcaagaaatgaaactctaacta 305  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28955067 gattttaactataacagttttattagtgagggcatggtccctcgaaaagcatgaaatgcttctttttagtaaaagtgttcaagaaatgaaactctaacta 28954968  T
Q  306 ttgagttactcgctatgcatatccttcataactcctttgtctaagcctcaattgatatttagtgggatgcattgtttttgtgacaatcggctggagataa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28954967 ttgagttactcgctatgcatatccttcataactcctttgtctaagcctcaattgatatttagtgggatgcattgtttttgtgacaatcggctggagataa 28954868  T
Q  406 gcatataaaggatgccctatgtattccttgccgttacttattgcagtcgaagctatgtctcttgcatataaataaagcatctagagtgtcatttacatta 505  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28954867 gcatataaaggatgccctatgtattccttgccgttactcattgcattcgaaactatgtctcttgcatataaataaagcatctagagtgtcatttacatta 28954768  T
Q  506 ttctgctcaattagaacctcttggtttgccagcctcgtacgtgtacattaacatgtaagc 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28954767 ttctgctcaattagaacctcttggtttgccagcctcgtacgtgtacattaacatgtaagc 28954708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 12634537 - 12634477
Alignment:
Q  77 tgtacacttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    ||||| |||||||||||||||||||| |||||| |||| ||||| ||||||| ||||||||    
T  12634537 tgtacgcttttgtggcttccagagcttaatcttaagtgttacaatatcatatattgagaga 12634477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 56461361 - 56461428
Alignment:
Q  70 gcttctatgtacacttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    |||||| |||||  |||||||||||| || || |||||||| ||||||||| ||||||||||||||||    
T  56461361 gcttctttgtacgtttttgtggcttctagggcgcaatcttgggtgctacaagatcatattttgagaga 56461428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 53171375 - 53171292
Alignment:
Q  54 gtactcgacactagacgcttctatgtacacttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    |||||| ||| |||| |||| | ||||  ||||||||||||| || || |||||||  ||||||||| ||||||||||||||||    
T  53171375 gtactcaacattagaggcttttttgtaagcttttgtggcttctagggcacaatcttaggtgctacaagatcatattttgagaga 53171292  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 4700493 - 4700338
Alignment:
Q  78 gtacacttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagagaaagcaaagataaatggtatggattttgattttgacaatgc 177  Q
    ||||||||||||||||||||| |  |||||||| | ||| ||| |||||| ||||||||| ||    ||||| ||||||| | | |||||||||||||||    
T  4700493 gtacacttttgtggcttccagggtccaatcttgggcgcttcaagatcatactttgagagatagtgg-gataagtggtatgaactctgattttgacaatgc 4700395  T
Q  178 tttaggatgatctttgtggtacgatttcaaattttaactataacagttttattagtga 235  Q
    ||| ||||| |||| |||||||||||  | ||||| ||| || |||||||| ||||||    
T  4700394 ttt-ggatggtcttcgtggtacgattctagattttgactgtagcagttttactagtga 4700338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 10950458 - 10950512
Alignment:
Q  83 cttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    |||||||||||||| | || ||| |||| ||||||||| ||||||||||||||||    
T  10950458 cttttgtggcttccggggcacaaccttgggtgctacaagatcatattttgagaga 10950512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 10958463 - 10958517
Alignment:
Q  83 cttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    |||||||||||||| | || ||| |||| ||||||||| ||||||||||||||||    
T  10958463 cttttgtggcttccggggcacaaccttgggtgctacaagatcatattttgagaga 10958517  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 434141 - 434087
Alignment:
Q  83 cttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    ||||||||||||| || || || ||||| ||||||||| ||||||||||||||||    
T  434141 cttttgtggcttctagggcgcagtcttgggtgctacaatatcatattttgagaga 434087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 27337546 - 27337414
Alignment:
Q  78 gtacacttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagagaaagcaaagataaatggtatggattttgattttgacaatgc 177  Q
    |||| ||||||||| ||| || || || ||||| ||||||||| |||||||||||||||| ||   |||||  ||| ||||| || |||||||| |||||    
T  27337546 gtacgcttttgtggtttctagggcgcagtcttgggtgctacaagatcatattttgagagacag-tgagatatgtggcatggacttggattttgataatgc 27337448  T
Q  178 tttaggatgatctttgtggtacgatttcaaatttt 212  Q
    ||| |||||||||| | || |||||| || |||||    
T  27337447 ttt-ggatgatcttcgcggaacgattccagatttt 27337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 28225879 - 28225825
Alignment:
Q  83 cttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    ||||||||||||| || || || ||||| ||||||||| ||||||||||||||||    
T  28225879 cttttgtggcttctagggcgcagtcttgggtgctacaagatcatattttgagaga 28225825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 972504 - 972450
Alignment:
Q  83 cttttgtggcttccagagctcaatcttgagtgctacaaaatcatattttgagaga 137  Q
    |||||||||||||||| || |||| ||| ||||||||| |||| |||||||||||    
T  972504 cttttgtggcttccagggcacaatattgggtgctacaagatcaaattttgagaga 972450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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