View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_40 (Length: 247)
Name: NF20083_low_40
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43285864 - 43286100
Alignment:
| Q |
1 |
tcttctttggatatataacannnnnnnggacaaatcggataacatatatcgagcaaaatgccatatgtcagtctcaaattgcatttatgctatatttgga |
100 |
Q |
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| T |
43285864 |
tcttctttggatatataacatttttttggacaaatcggataacatatatcgaacaaaatgccatatgtcagtctcaaattgcatttatgctatatttgga |
43285963 |
T |
|
| Q |
101 |
gcatattaatggcaagttatgtgtcttccattaacaagacaatcaagaattaagaacctttccatgtttgatgtgacctttagaggatccagcgctgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43285964 |
gcatattaatggcaagttatgtgtcttccattaacaagacaatcaagaattaagaacctttccatgtttgatgtgacctttagaggatccagcgctgcta |
43286063 |
T |
|
| Q |
201 |
ccaatgactatttcaaacatcaataccaactcctatg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43286064 |
ccaatgactatttcaaacatcaataccaactcctatg |
43286100 |
T |
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