View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_44 (Length: 241)
Name: NF20083_low_44
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 40353239 - 40353406
Alignment:
| Q |
34 |
agtagatctatctctttaacattat--cctaaaaagaaaaatccaaaccttcggaaattaaaattaaatatattaaacatgaacaataaagggacattga |
131 |
Q |
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| T |
40353239 |
agtagatctatctctttaacattatatcctaaaaa-aaatatccaaaccttcggaaattaaaattaaatatattaaacataaacaataaagggacattga |
40353337 |
T |
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| Q |
132 |
cacactagtatgaattcaattcttcatttcctgcactatctccataatctatatacgatgaaatctcaa |
200 |
Q |
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| T |
40353338 |
cacactagaatgaattcaattcttcatttcctgcactatcttcataatctatatacgaagaactctcaa |
40353406 |
T |
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