View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_47 (Length: 237)
Name: NF20083_low_47
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 7104811 - 7105024
Alignment:
| Q |
8 |
atagtgatgcttgataaaagtatgtgcattccttccaaaatttaatgccttcaaccacagggagtatgaatgcaacaaaaatacatcagaagggtataag |
107 |
Q |
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| T |
7104811 |
atagtgatgcttgataaatgcatgtgcattccttccaaaatttaatgccttcaaccacagggagtatgaatgcaacaaaaatacatcagaagggtataag |
7104910 |
T |
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| Q |
108 |
tataactataagttaaatagtaattgaggtgaaaaatatgatgctcacttttcctcttgccnnnnnnntaataggtctatcattttaaaagaaagaattg |
207 |
Q |
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| T |
7104911 |
tataactataagttaaatagtaattggggtgaaaaatatgatgctcacttttcctcttaccaaaacaataatacgtctatcattttaaaagaaagaattg |
7105010 |
T |
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| Q |
208 |
caagcaacaagtgt |
221 |
Q |
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|||||||||||||| |
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| T |
7105011 |
caagcaacaagtgt |
7105024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 7092583 - 7092797
Alignment:
| Q |
8 |
atagtgatgcttgataaaagtatgtgcattccttccaaaatttaatgccttcaaccacagggagtatgaatgcaacaaaaatacatcagaagggtataag |
107 |
Q |
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|||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||| || |
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| T |
7092583 |
atagcgatgcttgataaatgtatgtgccttccttccaaaattcaatgccttcaaccacagggagtacgaatgcaacagatatacatcagaagggtaaaac |
7092682 |
T |
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| Q |
108 |
tataa-ctataagttaaatagtaattgaggtgaaaaatatgatgctcacttttcctcttgccnnnnnnntaataggtctatcattttaaaagaaagaatt |
206 |
Q |
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| T |
7092683 |
tttaagttaaaacattaatagcaactggggtgaaaaatatgatgctcacttttcctcttaccaaaacaataatacgtctatcattttaaaagaaagaatt |
7092782 |
T |
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| Q |
207 |
gcaagcaacaagtgt |
221 |
Q |
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||||||||||||||| |
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| T |
7092783 |
gcaagcaacaagtgt |
7092797 |
T |
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