View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_49 (Length: 235)
Name: NF20083_low_49
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_49 |
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| [»] scaffold0577 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 6769375 - 6769177
Alignment:
| Q |
21 |
ctcagacttttggagattaatagcctgcctggattccgcttcataggaagctagaatatctttcatgacaatagcttcatttgttgaacctttgaagaag |
120 |
Q |
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| T |
6769375 |
ctcaggcttttggagattaatagcctgcccggatgccgcttcataggaagctagaatatctttcatgacaatagcttcatttgttgaacctttgaagaag |
6769276 |
T |
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| Q |
121 |
agaaaacagtcgtcagcaaagagtaagtgagaaataataggtgcagctgtgcaaatcttaacatcatgtaaaattccttgcccctctgctcgtttgata |
219 |
Q |
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| T |
6769275 |
agaaaacagtcgacagcaaagagtaagtgagaaataataggtgcagctgtgcaaatcttaacaccatgtaaaactccttgcccctctgctcgtttgata |
6769177 |
T |
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Target: scaffold0577 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 4225 - 4283
Alignment:
| Q |
115 |
aagaagagaaaacagtcgtcagcaaagagtaagtgagaaataataggtgcagctgtgca |
173 |
Q |
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| T |
4225 |
aagaaaagaaaacaatcgtctgcaaagagaaggtgagaaataattggtgcatctgtgca |
4283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 14126628 - 14126583
Alignment:
| Q |
109 |
cctttgaagaagagaaaacagtcgtcagcaaagagtaagtgagaaa |
154 |
Q |
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| T |
14126628 |
cctttgaagaacaaaaaacagtcatcagcaaagagtaggtgagaaa |
14126583 |
T |
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