View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_low_50 (Length: 228)
Name: NF20083_low_50
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 11563276 - 11563464
Alignment:
| Q |
25 |
gattctttgttcaagttctgccatgctttcttcagataaaaagctatacctttcagttggagtctcagcttggcagatatcgtcatttgacagccttgct |
124 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11563276 |
gattctttgttcaagttctgctatgctttcttcagataaaaagctatacctttcagttggagtctcagcttggcagatatcgtcatttgacagccttgct |
11563375 |
T |
|
| Q |
125 |
tccatgctctcatctccatctttagactgaacatggttaccatcctcagcaacagataacaaaggagaaggaccatcaacagccatatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11563376 |
tccatgctctcatctccatctttagactgaacatggttaccatcctcagcaacagataacaaaggagaaggaccatcaacagccatatt |
11563464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 11545287 - 11545087
Alignment:
| Q |
25 |
gattctttgttcaagttctgccatgctttcttcagataaaaagctatacctttcagttggagtctcagcttggcagatatcgtcatttgacagccttgct |
124 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11545287 |
gattctttgttcaagatctgcaatgcttgcttcagataaaaagctatacctttcagttggagtctcagcttcgcagacatcgtcatttgacagccttgct |
11545188 |
T |
|
| Q |
125 |
tccatgctctcatctccatctttagactga------------acatggttaccatcctcagcaacagataacaaaggagaaggaccatcaacagccatat |
212 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11545187 |
tccatgctctgatctgcatctttagactgaacatcttcgaagacatggttaccatcctcagcaacagataacaaaggagaaggaccatcaacagccatat |
11545088 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
|
|
| T |
11545087 |
t |
11545087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 11550008 - 11549903
Alignment:
| Q |
25 |
gattctttgttcaagttctgccatgctttcttcagataaaaagctatacctttcagttggagtctcagcttggcagatatcgtcatttgacagccttgct |
124 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
11550008 |
gattctttgttcaagttttgctatgctttcttcagataaaaagttatacctttcagttggagtctcagcttggcagacatcgtcatttgacagcctttct |
11549909 |
T |
|
| Q |
125 |
tccatg |
130 |
Q |
| |
|
|||||| |
|
|
| T |
11549908 |
tccatg |
11549903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 4951795 - 4951902
Alignment:
| Q |
47 |
atgctttcttcagataaaaagctatacctttcagttggagtctcagcttggcagatatcgtcatttgacagccttgcttccatgctctcatctccatctt |
146 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||| || |||||||| | | || || ||| |||||||| |||||||||||||||||||| |||| | |
|
|
| T |
4951795 |
atgctttcttcaaataaatagctatatctttcaatttgagtctcatcatcaca----tcatcacttgacagcattgcttccatgctctcatctgcatcct |
4951890 |
T |
|
| Q |
147 |
tagactgaacat |
158 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4951891 |
tagactgaacat |
4951902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 16799670 - 16799636
Alignment:
| Q |
177 |
cagataacaaaggagaaggaccatcaacagccata |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16799670 |
cagataaaaaaggagaaggaccatcaacagccata |
16799636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University