View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20083_low_6 (Length: 567)
Name: NF20083_low_6
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_6 |
 | |
|
| [»] scaffold0027 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0027 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 60787 - 60443
Alignment:
| Q |
1 |
tttaaaaactagttgaggattaagagggtgatttcttttccatttttcaattactttctggctaattattgtatgttagcttgtcgattatttggcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60787 |
tttaaaaactagttgaggattaagagggtgatttcttttccatttttcaattactttctggctaattattgtatgttagcttgtcgattatttggcatgt |
60688 |
T |
|
| Q |
101 |
tattttaggtccttagaagaagtgacaaacaccacttaaaactcacggatctttaaatctgaatgaaggtgtttagtctaacaatatcgtc-------gt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
60687 |
tattttaggtccttagaagaagtgacaaacaccacttaaaactcacggatctttaaatctgaatgaaggtgtttagtctaacaatatcgtcgttactggt |
60588 |
T |
|
| Q |
194 |
taagctaggggaccatttggcattataacttggctacagtattgacac--aacaacaataatataaggacnnnnnnnttatctccctaacatagtgttca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
60587 |
taagctaggggaccatttggcattataacttggctacagtattgacacataacaacaataatataaggacaaaaaaattatctccctaacatagtgttca |
60488 |
T |
|
| Q |
292 |
catatctaaaacatagaattgaaaatgatatttttaccatgcaac |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
60487 |
catatctaaaacatagaattgaaaatgatatttttatcatgcaac |
60443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 67814 - 67470
Alignment:
| Q |
1 |
tttaaaaactagttgaggattaagagggtgatttcttttccatttttcaattactttctggctaattattgtatgttagcttgtcgattatttggcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67814 |
tttaaaaactagttgaggattaagagggtgatttcttttccatttttcaattactttctggctaattattgtatgttagcttgtcgattatttggcatgt |
67715 |
T |
|
| Q |
101 |
tattttaggtccttagaagaagtgacaaacaccacttaaaactcacggatctttaaatctgaatgaaggtgtttagtctaacaatatcgtc-------gt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
67714 |
tattttaggtccttagaagaagtgacaaacaccacttaaaactcacggatctttaaatctgaatgaaggtgtttagtctaacaatatcgtcgttactagt |
67615 |
T |
|
| Q |
194 |
taagctaggggaccatttggcattataacttggctacagtattgacac--aacaacaataatataaggacnnnnnnnttatctccctaacatagtgttca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
67614 |
taagctaggggaccatttggcattataacttggctacagtattgacacataacaacaataatataaggacaaaaaaattatctccctaacatagtgttca |
67515 |
T |
|
| Q |
292 |
catatctaaaacatagaattgaaaatgatatttttaccatgcaac |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
67514 |
catatctaaaacatagaattgaaaatgatatttttatcatgcaac |
67470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 402 - 553
Target Start/End: Complemental strand, 60377 - 60226
Alignment:
| Q |
402 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60377 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
60278 |
T |
|
| Q |
502 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtatt |
553 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60277 |
tagacataggtttctttctatcacctttaacttgatctttagttattgtatt |
60226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 402 - 553
Target Start/End: Complemental strand, 67404 - 67253
Alignment:
| Q |
402 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
501 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67404 |
aagtaaagaagttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
67305 |
T |
|
| Q |
502 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtatt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67304 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtatt |
67253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 21323020 - 21323364
Alignment:
| Q |
1 |
tttaaaaactagttgaggattaagagggtgatttcttttccatttttcaattactttctggctaattattgtatgttagcttgtcgattatttggcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21323020 |
tttaaaaactagttgaggattaagagggtgatttcttttccatttttcaattactttctggctaattattgtatgttagcttgtcgattatttggcatgt |
21323119 |
T |
|
| Q |
101 |
tattttaggtccttagaagaagtgacaaacaccacttaaaactcacggatctttaaatctgaatgaaggtgtttagtctaacaatatcgtc-------gt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21323120 |
tattttaggtccttagaagaagtgacaaacaccacttaaaactcacggatctttaaatctgaatgaaggtgtttagtctaacaatatcgtcgttactggt |
21323219 |
T |
|
| Q |
194 |
taagctaggggaccatttggcattataacttggctacagtattgacac--aacaacaataatataaggacnnnnnnnttatctccctaacatagtgttca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21323220 |
taagctaggggaccatttggcattataacttggctacagtattgacacataacaacaataatataaggacaaaaaaattatctccctaacatagtgttca |
21323319 |
T |
|
| Q |
292 |
catatctaaaacatagaattgaaaatgatatttttaccatgcaac |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21323320 |
catatctaaaacatagaattgaaaatgatatttttatcatgcaac |
21323364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 402 - 553
Target Start/End: Original strand, 21323430 - 21323581
Alignment:
| Q |
402 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21323430 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
21323529 |
T |
|
| Q |
502 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtatt |
553 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21323530 |
tagacataggtttctttctatcacctttaacttgatctttagttattgtatt |
21323581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University