View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20083_low_7 (Length: 552)
Name: NF20083_low_7
Description: NF20083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20083_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 38386956 - 38387487
Alignment:
| Q |
1 |
aaggagttgagttgctaataacacagtcagtcaagtcttcgataatcacgtcccttttacaacatttcctgcaagataccgatttgagaagatccggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
38386956 |
aaggagttgagttgctaataacacagtcagtcaagtcttcaataatcacgtcccttttacaatatttcctgcaagataccgatttgagaagatccagttt |
38387055 |
T |
|
| Q |
101 |
ccagaatattaagcatacatctccccaaacatacaattacttggatctaaggttgttaaaattcagttgagatgccttgtaccaacnnnnnnnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38387056 |
ccagaatattaagcatacatctccccaaacatacaattacttggatctaaggttgttaaaattcagttgagatgccttgtaccaacataaaaaaaaa--- |
38387152 |
T |
|
| Q |
201 |
tattcagttgagatgcctataattgaagaaaatataagtttcaccatagtgattcatgataagaatgtccaacatgcatgatatatcaacgtggaacatt |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38387153 |
-aaacagttgagatgcctataattgaagaaaatataagtttcaccatagtgattcatgataagaatgtccaacatgcatgatatatcaacgtggaacatt |
38387251 |
T |
|
| Q |
301 |
aagcatgcattaatttattggagatggctgattttgccaacagtaggggtaaaatatatgaaattacaccgtagaaatttgaagttcctaatcatattat |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38387252 |
aagcatgcattaatttattggagatggctgatcttgccaacagtaggggtaaaatatatgaaattacaccgtagaaatttgaagttcctaatcatagtat |
38387351 |
T |
|
| Q |
401 |
atgataagagatcaagatcaaataatactgctaaaataaaatataagaaatgtttatctaacgaccatttttaagaaataaaattatgagtaaaacatgg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38387352 |
atgataagagatcaagatcaaataatactgctaaaataaaatataagaaatgtttatctaacgaccatttttaagaaataaaattatgagtaaaacatgg |
38387451 |
T |
|
| Q |
501 |
aagttcttacaggttggtaactcggcatgtataaag |
536 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38387452 |
aagttcttacaggttggtaactcggcatgtataaag |
38387487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 202 - 536
Target Start/End: Complemental strand, 42649514 - 42649181
Alignment:
| Q |
202 |
attcagttgagatgcctataattgaagaaaatataagtttcaccatagtgattcatgataagaatgtccaacatgcatgatatatcaacgtggaacatta |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42649514 |
attcagttgagatgcctataattgaagaaaatttaagtttcaccatagtgattcatgataagaatgtccaacatgcattatatatcaacgtggaacatta |
42649415 |
T |
|
| Q |
302 |
agcatgcattaatttattggagatggctgattttgccaacagtaggggtaaaatatatgaaattacaccgtagaaatttgaagttcctaatcatattata |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
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| T |
42649414 |
agcatgcattaatttattggagatggctgattttgccaacagtaggggtaaaatatatgaaattataccgtacaaatttgaagttcctaatcatagtata |
42649315 |
T |
|
| Q |
402 |
tgataagagatcaagatcaaataatactgctaaaataaaatataagaaatgtttatctaacgaccatttttaagaaataaaattatgagtaaaacatgga |
501 |
Q |
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||| |||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42649314 |
tgacaagaaatcaagatcaaa-ataactgctaaaataaaatataagaaatgcttatctaacgaccatttttaagaaattaaattatgagtaaaacatgga |
42649216 |
T |
|
| Q |
502 |
agttcttacaggttggtaactcggcatgtataaag |
536 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
42649215 |
agttcttacaggttggtaactcggcatgtataaag |
42649181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 42649672 - 42649498
Alignment:
| Q |
1 |
aaggagttgagttgctaataacacagtcagtcaagtcttcgataatcacgtcccttttacaacatttcctgcaagataccgatttgagaagatccggttt |
100 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||| |
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| T |
42649672 |
aaggagttgacttgctaataaca--gtcagtcaagtcttcaataatcacgtcccttttacaacatttcctgcaaaataccgatttcagatgatccagttt |
42649575 |
T |
|
| Q |
101 |
ccagaatattaagcatacatctccccaaacatacaattacttggatctaaggttgttaaaattcagttgagatgcct |
177 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
42649574 |
ccagaatattaagcatacagctccccaaacatacaattaattgcttctaaggctgttaaaattcagttgagatgcct |
42649498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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