View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20084_high_18 (Length: 242)

Name: NF20084_high_18
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20084_high_18
NF20084_high_18
[»] chr3 (13 HSPs)
chr3 (15-224)||(2768759-2768968)
chr3 (15-224)||(2856049-2856258)
chr3 (15-224)||(2748688-2748897)
chr3 (15-224)||(5412597-5412806)
chr3 (15-217)||(2818247-2818449)
chr3 (15-224)||(2797051-2797260)
chr3 (15-224)||(2758904-2759113)
chr3 (15-224)||(2838842-2839048)
chr3 (15-224)||(2790048-2790266)
chr3 (15-67)||(2755734-2755786)
chr3 (94-217)||(2807039-2807162)
chr3 (19-63)||(2806955-2806999)
chr3 (149-207)||(22648771-22648829)
[»] scaffold0691 (1 HSPs)
scaffold0691 (19-224)||(6391-6596)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2768759 - 2768968
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |  ||  || |||||||||||||||||||||||    
T  2768759 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagatt 2768858  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2768859 gcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2768958  T
Q  215 atagctttca 224  Q
    ||||||||||    
T  2768959 atagctttca 2768968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 2856258 - 2856049
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| |  | |||| | ||||||||| ||  |||| ||    
T  2856258 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggtt 2856159  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     |||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  2856158 acaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggt 2856059  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2856058 ataactttca 2856049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2748688 - 2748897
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |   |||| ||||| |  ||| |||||||||||||| ||  |||||||    
T  2748688 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagatt 2748787  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    ||||| | |||||||||||||| |||||||||| | || ||||| || |||||||||||||| || |||||| ||||||||||||||||||| |||||||    
T  2748788 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 2748887  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2748888 ataactttca 2748897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 5412597 - 5412806
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| | |   |||| | ||| |  | ||||||| |||||||| ||| |||||||    
T  5412597 gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagatt 5412696  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    |||||| | ||||||||||||| ||||| |||| | || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  5412697 gcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggt 5412796  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  5412797 ataactttca 5412806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 2818247 - 2818449
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |||| | ||||  ||||    || |||||| |||||||  | | |||||||    
T  2818247 gagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagatt 2818346  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     ||||  |||| || ||||||||||||||| || |||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  2818347 ccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2818446  T
Q  215 ata 217  Q
    |||    
T  2818447 ata 2818449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2797051 - 2797260
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||   |||| ||| | |  || ||||||||||||||| ||| |||||||    
T  2797051 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagatt 2797150  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    ||||| ||||||||||| |||| | ||| |||  | || ||||| |||||| || |||||||| | |||||| ||||||||||||||||||| |||||||    
T  2797151 gcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggt 2797250  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2797251 ataactttca 2797260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2758904 - 2759113
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||||||||| ||||||||||||||| | ||||| |||||||||||| ||| | |||  ||||| |  |||||  |||||||| || ||  |||||||    
T  2758904 gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagatt 2759003  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     |||||| |||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||| || |||||   ||||||||||||||||||| |||||    
T  2759004 acaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggt 2759103  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2759104 ataactttca 2759113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 2839048 - 2838842
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | |   |||| ||||| |  ||||||||| ||||||||   | || || |    
T  2839048 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatcttta---tgcatgact 2838952  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     ||||  ||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||| || ||| |   ||||||||| |||||||||||||||    
T  2838951 ccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggt 2838852  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2838851 ataactttca 2838842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2790048 - 2790266
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaa--cca--cc--ctggatgcgg---atctttaatc 105  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| | |   |||| || ||  |||  ||  |||||||| |   ||||||| ||    
T  2790048 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatctttattc 2790147  T
Q  106 ttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaa 205  Q
    | ||||||||||||||||||||||||||||| ||||| |||| | || ||||| |||||| |  |||||||| | |||||| ||||||||||||||||||    
T  2790148 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaa 2790247  T
Q  206 gcgagaggtatagctttca 224  Q
    | |||||||||| ||||||    
T  2790248 gtgagaggtataactttca 2790266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 2755734 - 2755786
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755734 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 2807039 - 2807162
Alignment:
Q  94 ggatctttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaa 193  Q
    ||||||| | ||| |||||||||||||||  |||||||||||| |||||||||| | || |||||  |||| |  ||||||||| ||||  || | ||||    
T  2807039 ggatcttcattctacaagattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaa 2807138  T
Q  194 tcaaggaaagaagcgagaggtata 217  Q
    ||||||||||||| ||||||||||    
T  2807139 tcaaggaaagaagtgagaggtata 2807162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2806955 - 2806999
Alignment:
Q  19 gaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 63  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||    
T  2806955 gaagcatcatttcgcattgaagatatcatcgatgaataccatcgg 2806999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 22648829 - 22648771
Alignment:
Q  149 aaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagc 207  Q
    |||||||||| |||||||| ||||||||||| |  ||| ||||||||||||||| ||||    
T  22648829 aaattgcatccgagattcaagacattaagttatttattcgtggaatcaaggaaaaaagc 22648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 6596 - 6391
Alignment:
Q  19 gaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaa 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| | |||| |||||||  |||||||||||||| ||| ||| |||||||| ||    
T  6596 gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaa 6497  T
Q  119 gcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatag 218  Q
    |||||||||||||||||| | | |  ||| | || ||||| |||||||||||||| ||| |||||||| ||||||||||||| ||||| || |||||||     
T  6496 gcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataa 6397  T
Q  219 ctttca 224  Q
    ||||||    
T  6396 ctttca 6391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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