View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_high_21 (Length: 227)
Name: NF20084_high_21
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 3110913 - 3111111
Alignment:
| Q |
14 |
atatcattatcattcaaacctaattctcttcggaccgatttgcgcaacaacttcctcttctcattcattttctcggtatcactcgaggaataaagtccag |
113 |
Q |
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| T |
3110913 |
atatcattatcattcaaacctaattctcttcggactgatttgcgcaacaacttcctcttctcattcattttctcggtatcactcgaggaataaagtccgg |
3111012 |
T |
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| Q |
114 |
ctgagaaagcaagttcatcattaacagacaatggaacatgtacaggctggaatctaagcgttatgctttcttcttcacaccatttttgccatttcttag |
212 |
Q |
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| T |
3111013 |
ctgagaaagcaagttcatcattaacagacaatggaacatgtacaggctggaatctaagcgttatgctttcttcttcacaccatttttgccatttcttag |
3111111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 26270439 - 26270241
Alignment:
| Q |
14 |
atatcattatcattcaaacctaattctcttcggaccgatttgcgcaacaacttcctcttctcattcattttctcggtatcactcgaggaataaagtccag |
113 |
Q |
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| T |
26270439 |
atatcattatcattcaaacctaattctctacggactgatgcacgcaataacttcctcttttcatcgattttctcggcatcactcgaggaatgaagtccgg |
26270340 |
T |
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| Q |
114 |
ctgagaaagcaagttcatcattaacagacaatggaacatgtacaggctggaatctaagcgttatgctttcttcttcacaccatttttgccatttcttag |
212 |
Q |
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| T |
26270339 |
ctgagaaagcaagtttatcattaacagacaatggaacatgtgcaggctgcaatctaagctttatgctttcttcatcacaccacttttgccatttcttag |
26270241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 44062888 - 44062807
Alignment:
| Q |
125 |
agttcatcattaacagacaatggaacatgtacaggctggaatctaagcgttatgctttcttcttcacaccatttttgccatt |
206 |
Q |
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|||||||||||||||||||| |||||| | |||| ||| |||| | ||||| ||||||||||||||||||||||||||| |
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| T |
44062888 |
agttcatcattaacagacaaaggaacaattgcaggttggtatctcaattttatgttttcttcttcacaccatttttgccatt |
44062807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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