View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20084_high_6 (Length: 487)

Name: NF20084_high_6
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20084_high_6
NF20084_high_6
[»] chr2 (9 HSPs)
chr2 (13-473)||(2723767-2724231)
chr2 (13-469)||(2745597-2746057)
chr2 (250-464)||(2708005-2708219)
chr2 (13-197)||(2717145-2717330)
chr2 (224-451)||(2712903-2713130)
chr2 (211-441)||(2717913-2718144)
chr2 (16-141)||(2712624-2712749)
chr2 (16-141)||(2707378-2707503)
chr2 (28-74)||(2662542-2662588)
[»] chr7 (13 HSPs)
chr7 (275-453)||(20283594-20283772)
chr7 (269-442)||(19938535-19938708)
chr7 (269-442)||(19969674-19969847)
chr7 (269-406)||(20288762-20288899)
chr7 (281-453)||(20279017-20279189)
chr7 (271-398)||(20005753-20005880)
chr7 (281-402)||(20062966-20063087)
chr7 (282-453)||(20168522-20168693)
chr7 (265-453)||(20303182-20303370)
chr7 (281-393)||(20243061-20243173)
chr7 (281-441)||(20273318-20273478)
chr7 (264-363)||(20231126-20231225)
chr7 (281-372)||(20263572-20263663)
[»] chr8 (4 HSPs)
chr8 (269-441)||(4131086-4131258)
chr8 (332-441)||(4151596-4151705)
chr8 (269-441)||(4120823-4120995)
chr8 (334-398)||(4160260-4160324)
[»] chr4 (2 HSPs)
chr4 (269-406)||(40824237-40824374)
chr4 (281-372)||(36285877-36285968)
[»] chr3 (1 HSPs)
chr3 (13-83)||(1050404-1050474)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 2723767 - 2724231
Alignment:
Q  13 aaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgtgatattccctcaattatgtataagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  2723767 aaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccctcaattatgtataagc 2723866  T
Q  113 gtttttgccaatctaaaatcttcttttttgttggatctgtagagacatcggtaa----ctaagtaatcataactagcaaaatgcaacttcttttattcgg 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||  ||| |    
T  2723867 gtttttgccaatctaaaatcttcttttttattggatctgtagagacatcggtaagtaactaagtaatcataactagcaaaatgcaacttctttccttcag 2723966  T
Q  209 ttttaaaatcacttcaagaaagaacaagtcaagatgtgcttaccaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatctttt 308  Q
    | |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2723967 tattaaaaccacttcaagaaagaacaagttaagatgtgctaaccaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatctttt 2724066  T
Q  309 cttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgttc 408  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2724067 cttcgccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgtcc 2724166  T
Q  409 tgaagcctttgaaagtcttttcactgctatttccagtccatcttgtaattctccctgatatattt 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2724167 tgaagcctttgaaagtcttttcactgctatttccagtccatcttgtaattctccctgatatattt 2724231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 2745597 - 2746057
Alignment:
Q  13 aaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgtgatattccctcaattatgtataagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  2745597 aaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccctcaattatgtataagc 2745696  T
Q  113 gtttttgccaatctaaaatcttcttttttgttggatctgtagagacatcggtaa----ctaagtaatcataactagcaaaatgcaacttcttttattcgg 208  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||  ||| |    
T  2745697 gtttttgccaatctaaaatcttattttttattggatctgtagagacatcggtaagtaactaagtaatcataactagcaaaatgcaacttctttccttcag 2745796  T
Q  209 ttttaaaatcacttcaagaaagaacaagtcaagatgtgcttaccaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatctttt 308  Q
    | |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2745797 tattaaaaccacttcaggaaagaacaagttaagatgtgctaaccaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatctttt 2745896  T
Q  309 cttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgttc 408  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  2745897 cttcgccttcgatgcaacagcctagaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctaacccctgtcc 2745996  T
Q  409 tgaagcctttgaaagtcttttcactgctatttccagtccatcttgtaattctccctgatat 469  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2745997 tgatgcctttgaaagtcttttcactgctattgccagtccatcttgtaattctccctgatat 2746057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 250 - 464
Target Start/End: Original strand, 2708005 - 2708219
Alignment:
Q  250 accaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattg 349  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || | |||||| |||||||||    
T  2708005 accaaatagataaaaatctaaactgttattaggcatgtactcatagaccaacatcttttcgtccccttcaatgcagcaacctagaagtcttacaagattg 2708104  T
Q  350 cgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttccagtccat 449  Q
    |||||||||||||| || || |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||| ||| | |||||    
T  2708105 cgatgttgaagctttgatataacaatcacttcattcataaattcttctaacccctgtgccgaagcctttgaaagtctcttcactgctacttctaatccat 2708204  T
Q  450 cttgtaattctccct 464  Q
    || ||||||||||||    
T  2708205 ctggtaattctccct 2708219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 2717145 - 2717330
Alignment:
Q  13 aaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgtgatattccctcaattatgtataagc 112  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  2717145 aaaatattactcggttttaggtctctatggattattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccttcaattatgtataagc 2717244  T
Q  113 gtttttgccaatctaaaatcttcttttttgttggatctgtagagacatcggtaactaagtaa-tcataactagcaaaatgcaactt 197  Q
    ||||||||||||||||||||||||||||| |||||||||| || ||||||| || ||| ||| | || ||||||||||| ||||||    
T  2717245 gtttttgccaatctaaaatcttcttttttattggatctgttgatacatcggaaagtaactaagtaatcactagcaaaattcaactt 2717330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 224 - 451
Target Start/End: Original strand, 2712903 - 2713130
Alignment:
Q  224 aagaaagaacaagtcaagatgtgcttaccaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgc 323  Q
    |||||| || |||| | ||||| || ||||||||| || ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  2712903 aagaaataataagttacgatgtactaaccaaataggtaaaaatctaaactattattcggcatgtattcatagaccaacattttttcttccccttcgatgc 2713002  T
Q  324 aacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaag 423  Q
    |||| || | |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||  |||| | | ||||||    
T  2713003 aacaacctagaagtcttacaagattgcgatgttgaagctttgaaatcacaatcacttcgttcataaattcttctaacccttgtgttgaaccttctgaaag 2713102  T
Q  424 tcttttcactgctatttccagtccatct 451  Q
    ||||||||| ||||||||  ||||||||    
T  2713103 tcttttcacggctatttcttgtccatct 2713130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 211 - 441
Target Start/End: Original strand, 2717913 - 2718144
Alignment:
Q  211 ttaaaatcacttcaagaaagaacaagtcaagatgtgc--ttaccaaatagatagaaatctaaactgttattaggcatgtactcatagaccaacatctttt 308  Q
    |||||||||||| |||||||||||||| | ||||| |  | |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  2717913 ttaaaatcacttgaagaaagaacaagtta-gatgtacactaaccaaatagataaaaatctaaactgttattaggcatatactcatagaccagcatttttt 2718011  T
Q  309 cttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgttc 408  Q
    ||||| |||||||||| ||||| |||||||| | |||||| |||||||||||||  ||||| |||||||||||||||||||||||||||| ||| ||       
T  2718012 cttcctcttcgatgcagcagcctaaaagtcttagaagattacgatgttgaagctctgaaattacaatcacttcattcataaattcttctatcccttggct 2718111  T
Q  409 tgaagcctttgaaagtcttttcactgctatttc 441  Q
    |||||   | | |||||||||||||||||||||    
T  2718112 tgaagttctagcaagtcttttcactgctatttc 2718144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 2712624 - 2712749
Alignment:
Q  16 atattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgtgatattccctcaattatgtataagcgtt 115  Q
    |||||||  ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| ||| || || |||||||||||||||| |||||||     
T  2712624 atattaccgggcttaaggtctctatgtattattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgtgtaagcgtc 2712723  T
Q  116 tttgccaatctaaaatcttctttttt 141  Q
    ||||||||||||||||||||||||||    
T  2712724 tttgccaatctaaaatcttctttttt 2712749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 2707378 - 2707503
Alignment:
Q  16 atattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgtgatattccctcaattatgtataagcgtt 115  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || || ||||| |||||||||  ||| ||||    
T  2707378 atattacttggctttaggtctctatgtattattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgtt 2707477  T
Q  116 tttgccaatctaaaatcttctttttt 141  Q
    ||| ||||||||||| ||||||||||    
T  2707478 ttttccaatctaaaaccttctttttt 2707503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 2662542 - 2662588
Alignment:
Q  28 tttaggtctctatgtattattcttaatctcgaatctctatgaagata 74  Q
    ||||| |||||||| |||||||||| ||| |||||||||||||||||    
T  2662542 tttagatctctatgaattattcttagtcttgaatctctatgaagata 2662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 453
Target Start/End: Complemental strand, 20283772 - 20283594
Alignment:
Q  275 ttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaa 374  Q
    ||||| ||||||| |||||| | |||||||||||| || ||||| |  |||||||| |||||||| ||||||||||| |||||||||||   |||||| |    
T  20283772 ttatttggcatgtcctcatacatcaacatcttttcatctccttcaacacaacagccaaaaagtcttacaagattgcggtgttgaagcttactaatcacca 20283673  T
Q  375 tcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttccagtccatcttg 453  Q
    | ||||||||||| ||||| || || || ||| | || ||  ||||||||||||| |||||||||||| | ||||||||    
T  20283672 ttacttcattcatgaattcctccagaccttgtccagatgctcttgaaagtcttttaactgctatttcctgaccatcttg 20283594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 442
Target Start/End: Complemental strand, 19938708 - 19938535
Alignment:
Q  269 aaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaa 368  Q
    ||||| ||||| |||||||||||||| | |||||||||||| || || || |  || ||||| | |||| | ||||||||||| ||||||||||| ||||    
T  19938708 aaacttttatttggcatgtactcatatatcaacatcttttcctctccgtcaacacagcagccaagaagttttacaagattgcggtgttgaagcttagaaa 19938609  T
Q  369 tcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttcc 442  Q
    | ||   |||||||||||| ||||||| ||| || ||| | || || || ||||||||||| ||||||||||||    
T  19938608 tgaccgccacttcattcatgaattcttttagaccttgtccagatgctttagaaagtcttttaactgctatttcc 19938535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 442
Target Start/End: Complemental strand, 19969847 - 19969674
Alignment:
Q  269 aaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaa 368  Q
    ||||| ||||| |||||||||||||| | |||||||||||| || || || |  || ||||| | |||| | ||||||||||| ||||||||||| ||||    
T  19969847 aaacttttatttggcatgtactcatatatcaacatcttttcctctccgtcaacacagcagccaagaagttttacaagattgcggtgttgaagcttagaaa 19969748  T
Q  369 tcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttcc 442  Q
    | ||   |||||||||||| ||||||| ||| || ||| | || || || ||||||||||| ||||||||||||    
T  19969747 tgaccgccacttcattcatgaattcttttagaccttgtccagatgctttagaaagtcttttaactgctatttcc 19969674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 406
Target Start/End: Complemental strand, 20288899 - 20288762
Alignment:
Q  269 aaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaa 368  Q
    ||||| ||||| |||||||||||||| | |||||||||||| || ||||| |  || ||||| | |||||| |  ||||||||||||||||||||  |||    
T  20288899 aaacttttatttggcatgtactcatatatcaacatcttttcctctccttcaacacagcagccaagaagtcttatcagattgcgatgttgaagcttacaaa 20288800  T
Q  369 tcacaatcacttcattcataaattcttctagcccctgt 406  Q
    | ||||  ||||||||| | ||||||||||||||||||    
T  20288799 tgacaactacttcattcttgaattcttctagcccctgt 20288762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 453
Target Start/End: Complemental strand, 20279189 - 20279017
Alignment:
Q  281 ggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcactt 380  Q
    |||||||||||||| | |||||||||||| || ||||| || ||||| || | |||| ||||||||||||| |||||||||||  |||  || |  ||||    
T  20279189 ggcatgtactcatacatcaacatcttttcatcaccttcaatacaacaaccaagaagtttaacaagattgcggtgttgaagcttacaaaggaccactactt 20279090  T
Q  381 cattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttccagtccatcttg 453  Q
    ||||||||||||| || | ||| ||| | || ||  | ||||||||||| |||||||||||| | ||||||||    
T  20279089 cattcataaattcctccaacccttgtccggatgctctagaaagtcttttaactgctatttcctggccatcttg 20279017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 20005753 - 20005880
Alignment:
Q  271 actgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatc 370  Q
    |||| |||| |||||| |||| || | |||||||||||| |  ||||| ||||| ||||| | |||||| ||||||||||| || |||||||| ||||||    
T  20005753 actgctatttggcatgaactcgtacatcaacatcttttcgtttccttcaatgcagcagcctacaagtcttacaagattgcggtgctgaagcttagaaatc 20005852  T
Q  371 acaatcacttcattcataaattcttcta 398  Q
    || |  ||||||||||| ||||||||||    
T  20005853 actacgacttcattcatgaattcttcta 20005880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 20062966 - 20063087
Alignment:
Q  281 ggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcactt 380  Q
    |||||||||||||| | |||||||||||| || || || || |||||||| | |||||| |||||||| || |||||||||||  |||  || |  ||||    
T  20062966 ggcatgtactcatacatcaacatcttttcatcaccgtcaatacaacagccaagaagtcttacaagattacggtgttgaagcttacaaaggaccactactt 20063065  T
Q  381 cattcataaattcttctagccc 402  Q
    ||||||| ||||||||||||||    
T  20063066 cattcatgaattcttctagccc 20063087  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 453
Target Start/End: Original strand, 20168522 - 20168693
Alignment:
Q  282 gcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttc 381  Q
    ||||||||||||| | |||||||||||| || ||||| || || || || | |||||| ||||||||||| |||||||||||  |||| || |  |||||    
T  20168522 gcatgtactcatacatcaacatcttttcatcgccttcaatacagcaaccaacaagtcttacaagattgcggtgttgaagcttacaaataaccactacttc 20168621  T
Q  382 attcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttccagtccatcttg 453  Q
    |||||| || || |  ||||| ||  | || ||  ||||||||||||| |||||||||||| | ||||||||    
T  20168622 attcatgaactcctgcagcccttgaccagatgctcttgaaagtcttttaactgctatttcccgaccatcttg 20168693  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 453
Target Start/End: Complemental strand, 20303370 - 20303182
Alignment:
Q  265 atctaaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttg 364  Q
    ||||||||| || ||||||||||||||||| | |||||||||||| || || ||  | || || || | |||||| |||||||| || |||||||||||     
T  20303370 atctaaacttttgttaggcatgtactcatacatcaacatcttttcatcaccatcagtacagcatccaagaagtcttacaagattacggtgttgaagctta 20303271  T
Q  365 gaaatcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttccagtccatcttg 453  Q
     |||  || |  ||||||||||| ||||| || | ||| ||| | || ||  | ||||||||||| |||||||||||| | ||||||||    
T  20303270 caaaggaccactacttcattcatgaattcctccaacccttgtccagacgctctagaaagtcttttaactgctatttcctgaccatcttg 20303182  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 393
Target Start/End: Complemental strand, 20243173 - 20243061
Alignment:
Q  281 ggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcactt 380  Q
    |||||||| ||||| | |||||||||||| || ||||| |  |||||||| | ||| || ||||| |||||||||||||||||  ||||||| |  ||||    
T  20243173 ggcatgtattcatacatcaacatcttttcatcaccttcaacacaacagccaataagccttacaaggttgcgatgttgaagcttacaaatcaccaatactt 20243074  T
Q  381 cattcataaattc 393  Q
    | ||||| |||||    
T  20243073 cgttcatgaattc 20243061  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 441
Target Start/End: Complemental strand, 20273478 - 20273318
Alignment:
Q  281 ggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcactt 380  Q
    |||||||||||||| | |||||||||||| || || ||  | || ||||| | |||||| |||||||| || |||||||||||  |||  || |  ||||    
T  20273478 ggcatgtactcatacatcaacatcttttcatcaccatcagtacagcagccaagaagtcttacaagattacggtgttgaagcttacaaagaaccactactt 20273379  T
Q  381 cattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttc 441  Q
    ||||||| ||||| || | ||| ||| | || || || ||||||||||| |||||||||||    
T  20273378 cattcatgaattcctccaacccttgtccagatgctttagaaagtcttttaactgctatttc 20273318  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 20231225 - 20231126
Alignment:
Q  264 aatctaaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagctt 363  Q
    |||| ||||| || || |||||||| ||||| | |||||||||||| || ||||| |  |||||||| | |||||| ||||| ||||| |||||||||||    
T  20231225 aatccaaacttttgtttggcatgtattcatacatcaacatcttttcatcaccttcaacacaacagccaataagtcttacaaggttgcggtgttgaagctt 20231126  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 20263663 - 20263572
Alignment:
Q  281 ggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcac 372  Q
    ||||| |||||||| | |||||||||||| || ||||| |  |||||||| | |||||| |||||||| || |||||||||||  |||||||    
T  20263663 ggcatatactcatacatcaacatcttttcatcaccttcaacacaacagccaataagtcttacaagattacggtgttgaagcttacaaatcac 20263572  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 441
Target Start/End: Original strand, 4131086 - 4131258
Alignment:
Q  269 aaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaa 368  Q
    ||||| ||||| |||||| |||||||||||||||| || ||| | | ||| |  ||||| || | |||||| |||||||||||||||||||| || ||||    
T  4131086 aaacttttatttggcatgaactcatagaccaacattttctctcctctttcaacacaacaaccaagaagtcttacaagattgcgatgttgaagtttagaaa 4131185  T
Q  369 tcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttc 441  Q
    |||| |  ||||||||||| ||||||||||  || ||| | || || ||||| ||||||||||| || |||||    
T  4131186 tcactacaacttcattcatgaattcttctattccttgtccagatgcttttgagagtcttttcacagcaatttc 4131258  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 441
Target Start/End: Original strand, 4151596 - 4151705
Alignment:
Q  332 aaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttca 431  Q
    |||||||| |||||||||||||||||||| || |||||||| |  ||||||||||| ||||||||||  || ||| | || || ||||| ||||||||||    
T  4151596 aaaagtctcacaagattgcgatgttgaagtttagaaatcactacaacttcattcatgaattcttctattccttgtccagatgcttttgagagtcttttca 4151695  T
Q  432 ctgctatttc 441  Q
    | || |||||    
T  4151696 cagcaatttc 4151705  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 441
Target Start/End: Original strand, 4120823 - 4120995
Alignment:
Q  269 aaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaa 368  Q
    ||||| ||||| |||||| ||||||| |||||||| |  ||  ||| ||| |  ||||| || | |||||| |||||||| ||||||||||| || ||||    
T  4120823 aaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaagattacgatgttgaagtttagaaa 4120922  T
Q  369 tcacaatcacttcattcataaattcttctagcccctgttctgaagcctttgaaagtcttttcactgctatttc 441  Q
    |||| |  ||||| ||||||||||||||||  || ||| | || || ||||| ||||||||||| || |||||    
T  4120923 tcactactacttcgttcataaattcttctattccttgtccagatgcttttgagagtcttttcacagcaatttc 4120995  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 4160260 - 4160324
Alignment:
Q  334 aagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttcta 398  Q
    |||||| |||||||||||||||||||| || ||||||||    ||||||||||||||||||||||    
T  4160260 aagtcttacaagattgcgatgttgaagtttagaaatcactgctacttcattcataaattcttcta 4160324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 406
Target Start/End: Original strand, 40824237 - 40824374
Alignment:
Q  269 aaactgttattaggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaa 368  Q
    ||||| ||||| ||||||||||| || | |||||||||||| ||  |||| |  || ||||| | |||||| | |||||||||||||||||||||  |||    
T  40824237 aaacttttatttggcatgtactcgtatatcaacatcttttcctctgcttcaacacagcagccaataagtcttataagattgcgatgttgaagcttacaaa 40824336  T
Q  369 tcacaatcacttcattcataaattcttctagcccctgt 406  Q
    ||||||  ||||||||| | ||||||||||| ||||||    
T  40824337 tcacaactacttcattcttgaattcttctagtccctgt 40824374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 36285968 - 36285877
Alignment:
Q  281 ggcatgtactcatagaccaacatcttttcttccccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcac 372  Q
    ||||||||||||| |||||| |||||||||||  |||| ||||| ||||| | ||||||||| |  || |  ||||||||||| ||||||||    
T  36285968 ggcatgtactcatcgaccaagatcttttcttctacttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcac 36285877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 1050474 - 1050404
Alignment:
Q  13 aaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtcc 83  Q
    ||||||||||| || ||||| |||| |||||| || |||||||| ||||||  ||||||||||| ||||||    
T  1050474 aaaatattacttggttttagatctcgatgtatgatccttaatctagaatcttgatgaagataaatcagtcc 1050404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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