View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_high_8 (Length: 455)
Name: NF20084_high_8
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 40233310 - 40233051
Alignment:
| Q |
19 |
aactaagataagcacaaccacaaaaaagcgtgacagaaggtgagtgagacaagtcaatggtaccaaaatctgggagtgggcagatgacagcaagagttta |
118 |
Q |
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| T |
40233310 |
aactaagataagcacaaccacaaaaaagcgtgacagaaggtgagtgagacaagtcaatggtaccaaaatctgggagtgggcagatgacagcaagagttta |
40233211 |
T |
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| Q |
119 |
actnnnnnnngcttcattgttattactacaaaagctgtagactcattacaatcatcgaaagtttattccagaaaaatttatcaataatgaatatcctaat |
218 |
Q |
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| T |
40233210 |
actaaaaaaagcttcattgttattactacaaaagctgtagactcattacaatcatcgaaagattattccagaaaaatttatcaataatgaatatcctaat |
40233111 |
T |
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| Q |
219 |
ctaatacagttattgcccgattaatcatgacattcatacctaataacttagtggatagga |
278 |
Q |
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| T |
40233110 |
ctaatacagttattgaccgattaatcatgacattcatacctaataacttagtggatagga |
40233051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 302 - 455
Target Start/End: Complemental strand, 40233050 - 40232897
Alignment:
| Q |
302 |
acgcgtttaaaaaataaccttaaggaaaattggtctaattatttgtaaaacgtgattcgatggacctaataaagatgtgttctatagtctaatttgttcc |
401 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40233050 |
acgcgtttaaaaaacaaccttgaggaaaattggtctaattatttgtaaaacgtgattcgatggacctaataaagatgtgttctatattctaatttgttcc |
40232951 |
T |
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| Q |
402 |
aattcaagattaaaatctattaattttatttgtttggatgtatataatataata |
455 |
Q |
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| T |
40232950 |
aattcaagattaaaatctattaattttatttgtttggatgtatataatataata |
40232897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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