View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_1 (Length: 726)
Name: NF20084_low_1
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32196362 - 32196137
Alignment:
| Q |
1 |
ctatgtgtggcacaccatctagtgcattattgtactgggtacatcattctctttagaaaccttataggggacatatgcggagaaatgacgcaagtgctta |
100 |
Q |
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| T |
32196362 |
ctatgtgtggcacaccatctagtgcattattgtactgggtacatcattct--ttagaaaccttataggggacatatgcggagaaatgacgcaagtgccta |
32196265 |
T |
|
| Q |
101 |
gtgtaacacacatggagatacataagacaaggtgtttactcgctacatacacgataattgtattagtgtcacacattgagttttactgttattttggcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32196264 |
gtgtaacacacatggagatacataagacaaggtgtttactcgctacatacacgataattgtatcagtgtcacacattgagttttactgttattttggcaa |
32196165 |
T |
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| Q |
201 |
acattttgtatcttaaatttacgaatta |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32196164 |
acattttgtatcttaaatttacgaatta |
32196137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 272 - 592
Target Start/End: Complemental strand, 32196123 - 32195811
Alignment:
| Q |
272 |
taagttaaaaatgataacaagagtagaagaattgcttggaatggagagaatgataaggcaaacgaaacnnnnnnnnnnnnaagttatcaaagataaagat |
371 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32196123 |
taagttaaaaatgataacaagagtagaagatttgcttggaatggagagaatgataaggcaaacgaaacgagagagaga--aagttatcaaagataaagaa |
32196026 |
T |
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| Q |
372 |
--ggaagcaaactttcttacataaaaaatctcgcccttaaatttgatggttggttaactttaaatttgcgtggacgaggtctcatttaatccatttatta |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
32196025 |
tgggaagcaaactttcttacataaaaaatctcgcccttaaatttgatggttggttaactttaaatttgcttggacgaggtctcatttaatccattaatta |
32195926 |
T |
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| Q |
470 |
atggatggttaactctcacataacaaatagatagtaaactcttttgtaaaaggtttttcaaactcttaaccatttgctttttaagtgtagttcattattc |
569 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
32195925 |
atggatggttaactctcacatgacaaatggatagtaaactcttttgtaaaaggtttttcaaactcttaaccattccc--------tgtagttcattattc |
32195834 |
T |
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| Q |
570 |
atttgaattcaatcgaattgatc |
592 |
Q |
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|||||| |||||||||||||||| |
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| T |
32195833 |
atttgagttcaatcgaattgatc |
32195811 |
T |
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