View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_10 (Length: 432)
Name: NF20084_low_10
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 37158891 - 37158476
Alignment:
| Q |
1 |
aaagcaggtaaggatggagggttttatgctagaatcatattggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggtt |
100 |
Q |
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| T |
37158891 |
aaagcaggtgaggatggagggttttatgctagaatcatactggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggtt |
37158792 |
T |
|
| Q |
101 |
aagtcaaagaataaaataaatattggaattgagggatttctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagtta |
200 |
Q |
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| T |
37158791 |
aagtcaaagaataaaataaatatcggaattgagggatttctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagtta |
37158692 |
T |
|
| Q |
201 |
aggcatagtgtccaaatactatatatgcttgatcataatcatgtattatttgcgcagagtgtatgttttaaccatatatttttcatcttttggtcttctg |
300 |
Q |
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| T |
37158691 |
aggcatagtgtccaaatactatatatgcttgatcataatcatgtattatttgcgcagagtgtatgttttaaccatatatttttcatcttttggtcttctg |
37158592 |
T |
|
| Q |
301 |
tttcaaacttttctggatatgt-aaagatattcatgtgaatgtaataatatttaagattattttgcagggacggacacattaattttaaataatgacgac |
399 |
Q |
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| T |
37158591 |
tttcaaacttttctggatatgtaaaagatattcatgtgaatgtaataatatttaagattattttgcagggacggacacattaattttaaataatgatgac |
37158492 |
T |
|
| Q |
400 |
acaaaatagttgctaa |
415 |
Q |
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| T |
37158491 |
acaaaatagttgctaa |
37158476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 37152692 - 37152462
Alignment:
| Q |
8 |
gtaaggatggagggttttatgctagaatcatattggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggttaagtcaa |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
37152692 |
gtaaggatggagggttttatgctagattcatattgggatcgttttggagattttgccaaagatatggaaatatacttacaagaaggcaagattaagtcaa |
37152593 |
T |
|
| Q |
108 |
agaataaaataaatattggaattgagggatttctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagttaaggcata |
207 |
Q |
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|||||||||||||||| |||||||| | ||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37152592 |
agaataaaataaatatcggaattgattgctttttggagagcttgaattccttattctctagctccaacattggaaaagttgttgttcaagttaaggccta |
37152493 |
T |
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| Q |
208 |
gtgtccaaatac--tatatatgcttgatcat |
236 |
Q |
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| T |
37152492 |
gtgtccaaatactgtatatatgcttgatcat |
37152462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37146665 - 37146427
Alignment:
| Q |
1 |
aaagcaggtaaggatggagggttttatgctagaatcatattggcatcgttttggagattttgctaaagatatggaaaaatacttgcaagaaggcaaggtt |
100 |
Q |
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|||| |||| ||||||||||| |||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |
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| T |
37146665 |
aaaggaggtgaggatggagggctttatgattaaatcatatttgcatcgttttggagattttgttaaagatatggaaaaatacttacaagaaggcaaaatt |
37146566 |
T |
|
| Q |
101 |
aagtcaaagaataaaataaatattggaattgagggatttctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagtta |
200 |
Q |
| |
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||| |||||| |||||| ||||| ||||||||| ||| |||| ||||| |||||| | ||||||| || |||||||||||||||||||||||||||| |
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| T |
37146565 |
aagccaaagagtaaaatcaatatcggaattgagaactttttggaaagcttaaactctgttttctctaattctaacattggaaaagttgttgttcaagtta |
37146466 |
T |
|
| Q |
201 |
aggcatagtgtccaaatactatatatgcttgatcataat |
239 |
Q |
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|||| |||| |||||||| |||| ||| |||| ||||| |
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| T |
37146465 |
aggcttagtacccaaataccatatttgcatgataataat |
37146427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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