View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20084_low_11 (Length: 378)

Name: NF20084_low_11
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20084_low_11
NF20084_low_11
[»] chr4 (6 HSPs)
chr4 (1-367)||(53591706-53592072)
chr4 (174-227)||(12583233-12583286)
chr4 (174-227)||(45892681-45892734)
chr4 (174-227)||(48665920-48665973)
chr4 (174-221)||(21801430-21801477)
chr4 (174-232)||(9733980-9734037)
[»] chr3 (3 HSPs)
chr3 (3-330)||(23779790-23780117)
chr3 (5-334)||(4858308-4858633)
chr3 (185-227)||(5999913-5999955)
[»] chr5 (5 HSPs)
chr5 (12-334)||(1953927-1954246)
chr5 (148-260)||(35247442-35247556)
chr5 (177-226)||(32538039-32538088)
chr5 (177-230)||(15195762-15195815)
chr5 (178-230)||(32653623-32653675)
[»] chr1 (3 HSPs)
chr1 (14-351)||(27308856-27309190)
chr1 (187-230)||(25078738-25078781)
chr1 (178-227)||(50590189-50590238)
[»] chr2 (7 HSPs)
chr2 (104-227)||(13135740-13135862)
chr2 (177-220)||(31266907-31266950)
chr2 (303-367)||(13135599-13135663)
chr2 (175-227)||(42236700-42236752)
chr2 (198-232)||(26063131-26063165)
chr2 (199-232)||(26068870-26068903)
chr2 (183-232)||(29829773-29829822)
[»] chr6 (3 HSPs)
chr6 (174-227)||(23661390-23661443)
chr6 (149-258)||(20490025-20490136)
chr6 (175-227)||(1445762-1445814)
[»] scaffold0002 (1 HSPs)
scaffold0002 (152-260)||(346996-347106)
[»] chr7 (4 HSPs)
chr7 (154-260)||(32864655-32864763)
chr7 (174-227)||(12119997-12120050)
chr7 (174-224)||(26470343-26470393)
chr7 (174-224)||(26546783-26546833)
[»] scaffold0527 (2 HSPs)
scaffold0527 (174-227)||(3321-3374)
scaffold0527 (174-227)||(11384-11437)
[»] chr8 (1 HSPs)
chr8 (183-228)||(10261336-10261381)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 53592072 - 53591706
Alignment:
Q  1 ttttttgttccgggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggtt 100  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  53592072 ttttttgttccgagaagatgaagattggcggtggttttgttccgactctctggtttggttgaatttttgaatatggtttgttcggatttaagatttggtt 53591973  T
Q  101 atatggttctgttcatttgtgcgatgttcggttggataccatccctcgatctggattcaacgagacttgtttctcctgatgttgctcgaaagggccaggt 200  Q
    || ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  53591972 atctggttctattcatttgtgcgatgtttggttggataccatcactcgatctggattcaacgagacttgtttcgcctgatgttgctcgaaagggctaggt 53591873  T
Q  201 gcgtagatgctccgtgttgacggtagttgttgatgtcgtaccttcagaactttatctgctacgatcgctttatgcgtcatcagtggactgctttacattc 300  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||| | |||||||| ||| ||| |||||||||||||||||    
T  53591872 gcgtagacgctccgtgttgacgatagttattgatgtcgtaccttcaggactttatctactacggttgctttatgtgtcgtcaatggactgctttacattc 53591773  T
Q  301 atgtcgttcgttcatccctcgatctgaactacgattgaattttcaagacctttgtgactctctgctc 367  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53591772 atgtcgtttgttcgtccctcgatctgaactacgattgaattttcaagacctttgtgactctgtgctc 53591706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 12583286 - 12583233
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  12583286 tcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggtagt 12583233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 45892734 - 45892681
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  45892734 tcctgatgttgctcaaaagggctaggtgcctagatgctccgtgttgacggtagt 45892681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 48665920 - 48665973
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||||||    
T  48665920 tcctgatgttgctcaaaagagctaggtgcgtagatgctccgtgttgacggtagt 48665973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 21801430 - 21801477
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgac 221  Q
    ||||||||||||||||| | || |||||||||||||||||||||||||    
T  21801430 tcctgatgttgctcgaatgagctaggtgcgtagatgctccgtgttgac 21801477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 9733980 - 9734037
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgttg 232  Q
    ||||||||| |||||||||||  ||||||||||| |||||||||||||||||| |||||    
T  9733980 tcctgatgt-gctcgaaagggttaggtgcgtagacgctccgtgttgacggtagctgttg 9734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 23779790 - 23780117
Alignment:
Q  3 ttttgttccgggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggattt-aagatttggtta 101  Q
    ||||||||||||||||||||||||| ||||||||  |||||||  |||| ||||||||||| |||||| |||| ||||||||||||| |||||||||||     
T  23779790 ttttgttccgggaagatgaagattggtggtggttccgttccgaacctctggtttggttgaatttttgagtctgatttgtccggattttaagatttggttc 23779889  T
Q  102 tatggttctgttcatttgtgcgatgttcggttggataccatccctcgatctg-gattcaacgagacttgtttctcctgatgttgctcgaaagggccaggt 200  Q
    |  ||||||||||||||||| |||||| |||| ||||||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||  ||||    
T  23779890 t--ggttctgttcatttgtgagatgtttggttagataccatccctcgatctaagattcaacaagacttgtttcgcctgatgttgctcgaaagggttaggt 23779987  T
Q  201 gcgtagatgctccgtgttgacggtagttgttgatgtcgtaccttcagaactttatctgctacgatcgctttatgcgtcatcagtggactgctttacattc 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  23779988 gcgtagacgctccgtgttgacggtagttgttgatgtcgtaccttcatgactttatctgctacggttgctttatgcgtcgtcagtggactgctttacattc 23780087  T
Q  301 atgtcgttcgttcatccctcgatctgaact 330  Q
    |||||||| |||||||||||||||||||||    
T  23780088 atgtcgtttgttcatccctcgatctgaact 23780117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 5 - 334
Target Start/End: Complemental strand, 4858633 - 4858308
Alignment:
Q  5 ttgttccgggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggttatat 104  Q
    ||||| ||||||||||||||||| ||||||| || ||| | || ||  |||| ||||||||||||||| ||||||||| |||||||||||||||||||      
T  4858633 ttgtttcgggaagatgaagattggtggtggtcttattctggctatccggtttagttgaaattttgaatttggtttgtctggatttaagatttggttat-- 4858536  T
Q  105 ggttctgttcatttgtgcgatgttcggttggataccatccctcgatctggattcaacgagacttgtttctcctgatgttgctcgaaagggccaggtgcgt 204  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| | || ||||||||| | ||||||    
T  4858535 ggttctgttcatttgtgcgatgtttggttggataccatccctcgatctggattcaacaagacttgtttcgcctgatat-gcacgaaagggctaagtgcgt 4858437  T
Q  205 agatgctccgtgttgacggtagttgttgatgtcgtaccttcagaactttatctgctacgatcgctttatgcgtcatcagtggactgctttacattcatgt 304  Q
    ||| |||| | ||||||| |||||||||||||||||||| ||| ||||||||||||||| | |||||||||||  |||||||||||||||||||| ||||    
T  4858436 agacgctctg-gttgacgatagttgttgatgtcgtacctgcaggactttatctgctacggttgctttatgcgttgtcagtggactgctttacatttatgt 4858338  T
Q  305 cgttcgttcatccctcgatctgaactacga 334  Q
    |||| ||||||||||||| |||||||||||    
T  4858337 cgtttgttcatccctcgaactgaactacga 4858308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 5999955 - 5999913
Alignment:
Q  185 ctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  5999955 ctcgaaagggctaggtgcgtagatgctctgtgttgacggtagt 5999913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 334
Target Start/End: Original strand, 1953927 - 1954246
Alignment:
Q  12 gggaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggttatatggttctg 111  Q
    |||||||||||||||  ||||||| |||||| | || ||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  1953927 gggaagatgaagattagtggtggtcttgttcaggctatctggtttagtttaaattttgaatctggtttgtccggatttaagatttggttct--ggttctg 1954024  T
Q  112 ttcatttgtgcgatgttcggttggataccatccctcgatctggattcaacgagacttgtttctcctgatgttgctcgaaagggccaggtgcgtagatgct 211  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||    
T  1954025 ttcatttgtgcgatgtt-ggttggataccatccctcgatctgcattcaacaagacttgtttctcctaatgttgctcgaaagggctaggtgcgtagacgct 1954123  T
Q  212 ccgtgttgacggtagttgttgatgtcgtaccttcagaactttatctgctacgatcgctttatgcgtcatcagtggactgctttacattcatgtcgttcgt 311  Q
    | |||||||||||||||||||||| ||||||||||  | ||||||||||||| | |||||||||||| ||||||||||||||||||||  ||||||| ||    
T  1954124 ctgtgttgacggtagttgttgatgccgtaccttcatgaatttatctgctacggttgctttatgcgtcgtcagtggactgctttacatttctgtcgtttgt 1954223  T
Q  312 tcatccctcgatctgaactacga 334  Q
    |||||||||||||| ||||||||    
T  1954224 tcatccctcgatctaaactacga 1954246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 35247442 - 35247556
Alignment:
Q  148 gatctggattcaacgagacttgt-ttctcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgttgat-gtcgtaccttc 245  Q
    ||||||||||||||||| ||| | ||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| | | ||||||||||     
T  35247442 gatctggattcaacgagtcttatgttctcctgaggttgctcgaaagagctaggtgcgtagatgctccgtgttgacggtagttgtcgttcgtcgtacctta 35247541  T
Q  246 agaactttatctgct 260  Q
    |||||| ||||||||    
T  35247542 agaactatatctgct 35247556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 32538088 - 32538039
Alignment:
Q  177 tgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtag 226  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  32538088 tgatgttgctcgaaagggctaggtgcatagatgctccgtgttgacggtag 32538039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 15195762 - 15195815
Alignment:
Q  177 tgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgt 230  Q
    ||||||| ||||||| ||| ||||||||||  ||||| ||||||||||||||||    
T  15195762 tgatgtttctcgaaaaggctaggtgcgtaggggctccatgttgacggtagttgt 15195815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 32653675 - 32653623
Alignment:
Q  178 gatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgt 230  Q
    ||||||||| |||| ||| |||||||||||  |||||||||||||| ||||||    
T  32653675 gatgttgcttgaaatggctaggtgcgtagacactccgtgttgacggcagttgt 32653623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 351
Target Start/End: Complemental strand, 27309190 - 27308856
Alignment:
Q  14 gaagatgaagattgatggtggttttgttccgactctctagtttggttgaaattttgaatctggtttgtccggatttaagatttggtta-tatggttctgt 112  Q
    |||||||||||||  |||||||||||| | ||||||   |||| ||||||||||||||| |||||||| ||||| ||  ||||||||  | || || |||    
T  27309190 gaagatgaagatttgtggtggttttgtcctgactctg--gtttagttgaaattttgaatttggtttgttcggatatacaatttggtttctctgattttgt 27309093  T
Q  113 tcatttgtgcgatgttcggttggataccatccctcgatctggattcaacgagacttgtttctcctgatgttgctcgaaagggccaggtgcgtagatgctc 212  Q
    |||| |||||||||||  | ||||||||||||||||||||||||||||| |||||| ||||   ||||||| |||||||| |  |||||||| || ||||    
T  27309092 tcatatgtgcgatgttttgctggataccatccctcgatctggattcaacaagacttttttcgggtgatgttactcgaaagagttaggtgcgtcgacgctc 27308993  T
Q  213 cgtgttgacggtagttgttgatgtcgtaccttcagaactttatctgctacgatcgctttatgcgtcatcagtggactgctttacattcatgtcgttcgtt 312  Q
    |||||||||| | |||||||| |||||||| |||||||||||| |||| |  | ||||||||| |||  ||||||||| | | | || |||||||| |||    
T  27308992 cgtgttgacgatggttgttgaagtcgtaccctcagaactttatatgctgcagttgctttatgcctcaatagtggactg-tgttcgtt-atgtcgttggtt 27308895  T
Q  313 catccctcgatctgaactacgattgaattttcaagacct 351  Q
    |||||||||||||||||||||| || |||||||||||||    
T  27308894 catccctcgatctgaactacgactggattttcaagacct 27308856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 25078781 - 25078738
Alignment:
Q  187 cgaaagggccaggtgcgtagatgctccgtgttgacggtagttgt 230  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  25078781 cgaaagggttaggtgcgtagaagctccgtgttgacggtagttgt 25078738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 50590238 - 50590189
Alignment:
Q  178 gatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||||||   ||||| |||||||||||||||| |||||||    
T  50590238 gatgttgctcgaaagggtttggtgcatagatgctccgtgttggcggtagt 50590189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 13135862 - 13135740
Alignment:
Q  104 tggttctgttcatttgtgcgatgttcggttggataccatccctcgatctggattcaacgagacttgtttctcctgatgttgctcgaaagggccaggtgcg 203  Q
    |||||||||||||||||| | ||||  ||||||| | ||||| ||||||||||||||| ||||||||||  || ||||||| ||||||| || | |||||    
T  13135862 tggttctgttcatttgtgtgttgtttcgttggatgc-atcccacgatctggattcaacaagacttgttttgccggatgttgttcgaaagagctatgtgcg 13135764  T
Q  204 tagatgctccgtgttgacggtagt 227  Q
    |||| |||||||||||||||||||    
T  13135763 tagaagctccgtgttgacggtagt 13135740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 31266907 - 31266950
Alignment:
Q  177 tgatgttgctcgaaagggccaggtgcgtagatgctccgtgttga 220  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  31266907 tgatgttgttcgaaagggctaggtgcgtagatgctccgtgttga 31266950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 13135663 - 13135599
Alignment:
Q  303 gtcgttcgttcatccctcgatctgaactacgattgaattttcaagacctttgtgactctctgctc 367  Q
    |||||| |||||||||||||| || |||||||||||| ||||||||| | || |||||| |||||    
T  13135663 gtcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgcgactctgtgctc 13135599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 42236752 - 42236700
Alignment:
Q  175 cctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    ||||| ||| |||||||| || ||||||||||||||||| |||||||||||||    
T  42236752 cctgaggttactcgaaagagctaggtgcgtagatgctccatgttgacggtagt 42236700  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 26063165 - 26063131
Alignment:
Q  198 ggtgcgtagatgctccgtgttgacggtagttgttg 232  Q
    |||||||||||||||||||||||||||||| ||||    
T  26063165 ggtgcgtagatgctccgtgttgacggtagtagttg 26063131  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 26068903 - 26068870
Alignment:
Q  199 gtgcgtagatgctccgtgttgacggtagttgttg 232  Q
    ||||||||||||||||||||||||||||| ||||    
T  26068903 gtgcgtagatgctccgtgttgacggtagtagttg 26068870  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 29829773 - 29829822
Alignment:
Q  183 tgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgttg 232  Q
    ||||||||||||   |||||||||| ||||| ||||||||||||||||||    
T  29829773 tgctcgaaagggtttggtgcgtagacgctccatgttgacggtagttgttg 29829822  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 23661390 - 23661443
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23661390 tcctgatgttgctcgaaagggctaggtgcgtagatgctccgtgttgacggtagt 23661443  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 20490136 - 20490025
Alignment:
Q  149 atctggattcaacgagacttgt-ttctcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgttgat-gtcgtaccttca 246  Q
    ||||||||| |||||| ||||| |||||  |||||| ||||| ||||| |||||||||||| |||| ||||| |||||||| | | | |||||||||| |    
T  20490136 atctggattaaacgagtcttgtattctcaagatgtttctcgatagggctaggtgcgtagatactccatgttgccggtagttatcgttcgtcgtaccttaa 20490037  T
Q  247 gaactttatctg 258  Q
    ||||| ||||||    
T  20490036 gaactgtatctg 20490025  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 1445762 - 1445814
Alignment:
Q  175 cctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    ||||||| | |||||||| || |||||||| |||||||||||||||| |||||    
T  1445762 cctgatgcttctcgaaagtgcaaggtgcgttgatgctccgtgttgactgtagt 1445814  T

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Target: scaffold0002 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 347106 - 346996
Alignment:
Q  152 tggattcaacgagacttgtttct-cctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgttgat-gtcgtaccttcagaa 249  Q
    ||||||||||||| ||||| | | ||||| |||||||||||| || |||||||||||||||| ||||||||||||||||| | | ||| |||||| ||||    
T  347106 tggattcaacgagtcttgtgtttgcctgaggttgctcgaaagagctaggtgcgtagatgctctgtgttgacggtagttgtcgttcgtcataccttaagaa 347007  T
Q  250 ctttatctgct 260  Q
    || ||||||||    
T  347006 ctgtatctgct 346996  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 32864763 - 32864655
Alignment:
Q  154 gattcaacgagacttgt-ttctcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagttgttg-atgtcgtaccttcagaact 251  Q
    ||||||||||| ||||| ||| ||||| |||||||||||| || |||||  ||||||||||||||||||||| ||||| |  ||||||||||| |||| |    
T  32864763 gattcaacgagtcttgtgttcgcctgaggttgctcgaaagagctaggtgtatagatgctccgtgttgacggtggttgtcgtttgtcgtaccttaagaatt 32864664  T
Q  252 ttatctgct 260  Q
     ||||||||    
T  32864663 gtatctgct 32864655  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 12119997 - 12120050
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||||||||||| ||||| ||||||| || ||||||||||||||    
T  12119997 tcctgatgttgctcgaaagggctaggtgtgtagatgttctgtgttgacggtagt 12120050  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 26470343 - 26470393
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggt 224  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  26470343 tcctaatgttcctcgaaagggctaggtgcgtagatgctccatgttgacggt 26470393  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 26546783 - 26546833
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggt 224  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  26546783 tcctaatgttcctcgaaagggctaggtgcgtagatgctccatgttgacggt 26546833  T

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Target: scaffold0527 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 3374 - 3321
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||| |||||    
T  3374 tcctgatgttgctcgaaagggctaggtgcatagatgctccgtgatgactgtagt 3321  T

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Target: scaffold0527; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 11437 - 11384
Alignment:
Q  174 tcctgatgttgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagt 227  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||| |||||    
T  11437 tcctgatgttgctcgaaagggctaggtgcatagatgctccgtgatgactgtagt 11384  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 10261381 - 10261336
Alignment:
Q  183 tgctcgaaagggccaggtgcgtagatgctccgtgttgacggtagtt 228  Q
    |||| |||||||| ||||||||||| ||||||| ||||||||||||    
T  10261381 tgcttgaaagggctaggtgcgtagaagctccgtattgacggtagtt 10261336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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