View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_12 (Length: 326)
Name: NF20084_low_12
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 13885106 - 13885416
Alignment:
| Q |
1 |
gacgaaaaataaattctcttactcaaattccattgaaagtgaaaagtataaaatttgattttaaacgaaatgtttagaaaaaagtttgtttttcactttt |
100 |
Q |
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| T |
13885106 |
gacgaaaaataaattctcttactcaaattccattgaaagtgaaaagtataaaatttgattttaaacgaaatgtttagaaaaaagtttgtttttcactttt |
13885205 |
T |
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| Q |
101 |
aacttatttctttggatcacttcatcctggccctataaatttaaaataacaatgatgcataatatagaaaataaattttcagtataaaaaagttaattct |
200 |
Q |
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| T |
13885206 |
aacttatttctttggatcacttcatcctcgccctataaatttaaaataacaatgatgcataatatagaaaataaattttcagcataaaaaagttaattct |
13885305 |
T |
|
| Q |
201 |
taatagattttttgggaataacaaatgtgttgtataatcaaatatattaatattacac-acacaaacacactattgtttgattgacattgcaaatgcata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13885306 |
taatagattttttgggaataacaaatgtgttgtataatcaaatatattaatattacacaacacaaacacactattgtttgattgacattgcaaatgcata |
13885405 |
T |
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| Q |
300 |
accacatttct |
310 |
Q |
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||||||||||| |
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| T |
13885406 |
accacatttct |
13885416 |
T |
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