View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20084_low_14 (Length: 285)
Name: NF20084_low_14
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 239109 - 239359
Alignment:
| Q |
16 |
gagttcaaacacagcactaatgctaattccacacatcaagcggcccaaatttcttaccttgatattgttcatgcatgctcctttttgtttaaatggtagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
239109 |
gagttcaaacacagcactaatgctaattccacacatcaagcggcccaaatttcttaccttgatattgttcatgcatgcttctttttgtttaaatggtagt |
239208 |
T |
|
| Q |
116 |
taaagtcatgtgctacttccctttcttatatatataaacttttttctcaaaattacacttgtgtagttgtgttttctcatggccttacccttaaccacaa |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
239209 |
taaagtcaggtgctacttccctttcttatatatataaacttttttctcaaaattacacttgtgtagttgtgttttctcatggccttacccttagccacaa |
239308 |
T |
|
| Q |
216 |
atcggaatctagactgcgactttgaattaaaacgttcttaatgcttaagtt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
239309 |
atcggaatctagactgcgactttgaattaaaacgttcttaatgcttaagtt |
239359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University