View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_15 (Length: 283)
Name: NF20084_low_15
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 24695199 - 24695453
Alignment:
| Q |
21 |
agcacaataccacccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaa |
120 |
Q |
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| T |
24695199 |
agcacaataccatccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaa |
24695298 |
T |
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| Q |
121 |
gtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttgt |
220 |
Q |
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| T |
24695299 |
gtcacctgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccactgcacaatgttgt |
24695398 |
T |
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| Q |
221 |
aattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctc |
275 |
Q |
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| T |
24695399 |
aattattgatatttaatttaatacgcaaccagttccaagaataaactttcatctc |
24695453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 24707732 - 24707987
Alignment:
| Q |
21 |
agcacaataccacccaaattgttgcaaacctaacacactgctatgataa-gacacaaccgagacaaataaaatctgagctgaattagatggtatgaatta |
119 |
Q |
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|||||| ||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
24707732 |
agcacagtaccacccaaactgctgcaaacctaacacactgctacgataaagacacaaccgagacaaataaaatctgagttgaattagagggtatgaatta |
24707831 |
T |
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| Q |
120 |
agtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttg |
219 |
Q |
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| T |
24707832 |
agtcaattatgcacttcaaaatcaccagaaccatctaaattttcaaaatgtaatattgtcaaggcaagcaaacggactcaaacacgactgcacaatattg |
24707931 |
T |
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| Q |
220 |
taattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctc |
275 |
Q |
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|||| | || ||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
24707932 |
taatcgtgaatatttgatttaatccacaaccagttccaagaataaactttcatctc |
24707987 |
T |
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