View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20084_low_19 (Length: 242)

Name: NF20084_low_19
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20084_low_19
NF20084_low_19
[»] chr3 (13 HSPs)
chr3 (15-224)||(2768759-2768968)
chr3 (15-224)||(2856049-2856258)
chr3 (15-224)||(2748688-2748897)
chr3 (15-224)||(5412597-5412806)
chr3 (15-217)||(2818247-2818449)
chr3 (15-224)||(2797051-2797260)
chr3 (15-224)||(2758904-2759113)
chr3 (15-224)||(2838842-2839048)
chr3 (15-224)||(2790048-2790266)
chr3 (15-67)||(2755734-2755786)
chr3 (94-217)||(2807039-2807162)
chr3 (19-63)||(2806955-2806999)
chr3 (149-207)||(22648771-22648829)
[»] scaffold0691 (1 HSPs)
scaffold0691 (19-224)||(6391-6596)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2768759 - 2768968
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |  ||  || |||||||||||||||||||||||    
T  2768759 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagatt 2768858  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2768859 gcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2768958  T
Q  215 atagctttca 224  Q
    ||||||||||    
T  2768959 atagctttca 2768968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 2856258 - 2856049
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| |  | |||| | ||||||||| ||  |||| ||    
T  2856258 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggtt 2856159  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     |||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  2856158 acaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggt 2856059  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2856058 ataactttca 2856049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2748688 - 2748897
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |   |||| ||||| |  ||| |||||||||||||| ||  |||||||    
T  2748688 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagatt 2748787  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    ||||| | |||||||||||||| |||||||||| | || ||||| || |||||||||||||| || |||||| ||||||||||||||||||| |||||||    
T  2748788 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 2748887  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2748888 ataactttca 2748897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 5412597 - 5412806
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| | |   |||| | ||| |  | ||||||| |||||||| ||| |||||||    
T  5412597 gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagatt 5412696  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    |||||| | ||||||||||||| ||||| |||| | || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  5412697 gcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggt 5412796  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  5412797 ataactttca 5412806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 2818247 - 2818449
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |||| | ||||  ||||    || |||||| |||||||  | | |||||||    
T  2818247 gagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagatt 2818346  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     ||||  |||| || ||||||||||||||| || |||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  2818347 ccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2818446  T
Q  215 ata 217  Q
    |||    
T  2818447 ata 2818449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2797051 - 2797260
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||   |||| ||| | |  || ||||||||||||||| ||| |||||||    
T  2797051 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagatt 2797150  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
    ||||| ||||||||||| |||| | ||| |||  | || ||||| |||||| || |||||||| | |||||| ||||||||||||||||||| |||||||    
T  2797151 gcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggt 2797250  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2797251 ataactttca 2797260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2758904 - 2759113
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    |||||||||||| ||||||||||||||| | ||||| |||||||||||| ||| | |||  ||||| |  |||||  |||||||| || ||  |||||||    
T  2758904 gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagatt 2759003  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     |||||| |||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||| || |||||   ||||||||||||||||||| |||||    
T  2759004 acaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggt 2759103  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2759104 ataactttca 2759113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 2839048 - 2838842
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | |   |||| ||||| |  ||||||||| ||||||||   | || || |    
T  2839048 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatcttta---tgcatgact 2838952  T
Q  115 gcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggt 214  Q
     ||||  ||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||| || ||| |   ||||||||| |||||||||||||||    
T  2838951 ccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggt 2838852  T
Q  215 atagctttca 224  Q
    ||| ||||||    
T  2838851 ataactttca 2838842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2790048 - 2790266
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaa--cca--cc--ctggatgcgg---atctttaatc 105  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| | |   |||| || ||  |||  ||  |||||||| |   ||||||| ||    
T  2790048 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatctttattc 2790147  T
Q  106 ttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaa 205  Q
    | ||||||||||||||||||||||||||||| ||||| |||| | || ||||| |||||| |  |||||||| | |||||| ||||||||||||||||||    
T  2790148 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaa 2790247  T
Q  206 gcgagaggtatagctttca 224  Q
    | |||||||||| ||||||    
T  2790248 gtgagaggtataactttca 2790266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 2755734 - 2755786
Alignment:
Q  15 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755734 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 2807039 - 2807162
Alignment:
Q  94 ggatctttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaa 193  Q
    ||||||| | ||| |||||||||||||||  |||||||||||| |||||||||| | || |||||  |||| |  ||||||||| ||||  || | ||||    
T  2807039 ggatcttcattctacaagattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaa 2807138  T
Q  194 tcaaggaaagaagcgagaggtata 217  Q
    ||||||||||||| ||||||||||    
T  2807139 tcaaggaaagaagtgagaggtata 2807162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2806955 - 2806999
Alignment:
Q  19 gaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 63  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||    
T  2806955 gaagcatcatttcgcattgaagatatcatcgatgaataccatcgg 2806999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 22648829 - 22648771
Alignment:
Q  149 aaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagc 207  Q
    |||||||||| |||||||| ||||||||||| |  ||| ||||||||||||||| ||||    
T  22648829 aaattgcatccgagattcaagacattaagttatttattcgtggaatcaaggaaaaaagc 22648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 6596 - 6391
Alignment:
Q  19 gaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaa 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| | |||| |||||||  |||||||||||||| ||| ||| |||||||| ||    
T  6596 gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaa 6497  T
Q  119 gcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatag 218  Q
    |||||||||||||||||| | | |  ||| | || ||||| |||||||||||||| ||| |||||||| ||||||||||||| ||||| || |||||||     
T  6496 gcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataa 6397  T
Q  219 ctttca 224  Q
    ||||||    
T  6396 ctttca 6391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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