View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_2 (Length: 677)
Name: NF20084_low_2
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 36676392 - 36675744
Alignment:
| Q |
1 |
ttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676392 |
ttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgt |
36676293 |
T |
|
| Q |
101 |
gctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
36676292 |
gctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataatgttatt |
36676193 |
T |
|
| Q |
201 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676192 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
36676093 |
T |
|
| Q |
301 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaatatgcttcttctat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36676092 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacacattaaggggattagaatatgcttcttctat |
36675993 |
T |
|
| Q |
401 |
tcctatggacgaaattgtcgagttttaaataattagatcgggtttatgtcggaaaaaagtaatgttagtctcagtaacattgtgataaaaagttgtaatg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675992 |
tcctatggacgaaattgtcgagttttaaataattagatcgggtttatgtctgaaaaaagtaatgttagtctcagtaacattgtgataaaaagttgtaatg |
36675893 |
T |
|
| Q |
501 |
ctctcctgataataaaaaataagcctgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaagtgaacatgaactccattttcct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
36675892 |
ctctcctgataataaaaaataagcctgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaattgaacatgaactccattttcct |
36675793 |
T |
|
| Q |
601 |
ctccatcctctacatctccctcatacttgtactttttctctattatttt |
649 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675792 |
ctccatcctctacatctccctcatacttgtactttttctctattatttt |
36675744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 36673637 - 36673200
Alignment:
| Q |
1 |
ttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
36673637 |
ttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtggacgacgggaagaaggatgtctacgactttggaagtgt |
36673538 |
T |
|
| Q |
101 |
gctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36673537 |
gctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataacgtcatt |
36673438 |
T |
|
| Q |
201 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673437 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
36673338 |
T |
|
| Q |
301 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaatatgcttcttctat |
400 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||| |||| | |||| | || |||||||| |||||||||||||||||||||| |||| || |
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|
| T |
36673337 |
tgcttgaagtttacaacaatatgagcaatgtaaggaagggacaaaatagctctgttaataattctgacagattaaggggattagaatatgctacttcaat |
36673238 |
T |
|
| Q |
401 |
tcctatggacgaaattgtcgagttttaaataattagatc |
439 |
Q |
| |
|
| |||| ||||||||||| ||| |||||||||| ||||| |
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| T |
36673237 |
tactatagacgaaattgttgag-tttaaataataagatc |
36673200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 64 - 391
Target Start/End: Complemental strand, 36695858 - 36695531
Alignment:
| Q |
64 |
acgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36695858 |
acgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaa |
36695759 |
T |
|
| Q |
164 |
tctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36695758 |
tctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgt |
36695659 |
T |
|
| Q |
264 |
gagtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||| ||||||||||| ||||||||||| |
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|
| T |
36695658 |
gagtgtgttcacccttttccagaccaaaggtcaacaatgcttgaagtttacaacaatatgagcaatgacaggaagccaccaaatggttatggtgatgatt |
36695559 |
T |
|
| Q |
364 |
ctgacccattaaggggattagaatatgc |
391 |
Q |
| |
|
||||| ||||||||||||| |||||||| |
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|
| T |
36695558 |
ctgacacattaaggggatttgaatatgc |
36695531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 36684059 - 36683744
Alignment:
| Q |
7 |
aggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacgactttggaagtgtgctttt |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36684059 |
aggcgaaatttatgaatcccaacattgaagatcatctcagcacgatgtttaaagtgaatgacgggaagaaggatgtctacgactttggaagtgtgctttt |
36683960 |
T |
|
| Q |
107 |
tgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagtttttataacgtcgttgataaa |
206 |
Q |
| |
|
|||| |||| ||||| ||||||||||| ||| || | |||||||| ||| |||||||| | || |||||||| | ||||||||| | | |||||||| |
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|
| T |
36683959 |
tgaactgattacaggaaaaacatataacgaactgactcgttcatccaccaccactaatctctatgataacccttcaaatttttataatgccattgataaa |
36683860 |
T |
|
| Q |
207 |
tctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttg |
306 |
Q |
| |
|
||| || | ||| ||||| ||||||||| ||| ||| ||||| | |||||||| |||||||||||| | ||| | | ||||||| ||||||||||||| |
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|
| T |
36683859 |
tctctgcctgggcaaggatttgaaaatggagtatgtgctctcctaaagattgcatgtgagtgtgttaaacctat---aaaccaaagaccaacaatgcttg |
36683763 |
T |
|
| Q |
307 |
aagtttacaacaatatgag |
325 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
36683762 |
aagtttacaacaatttgag |
36683744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 594
Target Start/End: Complemental strand, 36695471 - 36695413
Alignment:
| Q |
541 |
atatgtataatatgtctcccccac-----atatattaaaaaagtgaacatgaactccat |
594 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36695471 |
atatgtataatacgtctcccccacgccacatatattaaaaaagtgaacatgaactccat |
36695413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 583
Target Start/End: Complemental strand, 36673069 - 36673012
Alignment:
| Q |
526 |
tgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaagtgaac |
583 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||| |||||| ||| ||||| |
|
|
| T |
36673069 |
tgttattgctcaaatatatgtataatatatctccccaacatgtattaagaaaatgaac |
36673012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 649
Target Start/End: Complemental strand, 36695418 - 36695370
Alignment:
| Q |
601 |
ctccatcctctacatctccctcatacttgtactttttctctattatttt |
649 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
36695418 |
ctccatcgtctacatctccctcatacttgtaatttctctcttttatttt |
36695370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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