View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_23 (Length: 220)
Name: NF20084_low_23
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48124132 - 48123913
Alignment:
| Q |
1 |
atacataaatatatatagacttatagatttcaaaagtgattaacaacatatacttttgtgttccaaaaatcttcctccaattcatgaaggggtaatgtag |
100 |
Q |
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| T |
48124132 |
atacataaatatatatagacctatagatttcaaaagtgattaacaacatatacttttgtgttccaaaaatcttcctccaattcatgaaggggtaatgtag |
48124033 |
T |
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| Q |
101 |
gccttcacgtgtatgtatgtagttaaattttacaccctgttggatcatatatacgtaacattattttgaatccattgcaatattttgtgtgcttctcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48124032 |
gccttcacgtgtatgtatgtagttaaattttacacccggttggatcatatatacctaacattattttgaatccattgcaatattttgtgtgcttctcaat |
48123933 |
T |
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| Q |
201 |
aatatatggaaaatacacct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
48123932 |
aatatatggaaaatacacct |
48123913 |
T |
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