View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20084_low_25 (Length: 213)

Name: NF20084_low_25
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20084_low_25
NF20084_low_25
[»] chr5 (3 HSPs)
chr5 (1-99)||(2327709-2327807)
chr5 (23-76)||(32766087-32766139)
chr5 (35-97)||(1374512-1374575)
[»] chr2 (2 HSPs)
chr2 (23-97)||(7154910-7154985)
chr2 (35-97)||(35819073-35819136)
[»] chr1 (5 HSPs)
chr1 (23-97)||(25892727-25892802)
chr1 (35-97)||(32226377-32226439)
chr1 (23-97)||(36536350-36536425)
chr1 (35-79)||(31460687-31460731)
chr1 (35-67)||(37491199-37491231)
[»] chr8 (1 HSPs)
chr8 (23-97)||(14358540-14358615)
[»] chr7 (3 HSPs)
chr7 (23-82)||(48825957-48826015)
chr7 (36-97)||(37180038-37180100)
chr7 (1-80)||(21529604-21529682)
[»] chr3 (3 HSPs)
chr3 (23-97)||(41653954-41654029)
chr3 (35-82)||(3987349-3987395)
chr3 (23-80)||(41653809-41653865)
[»] chr4 (3 HSPs)
chr4 (41-82)||(36556981-36557021)
chr4 (23-97)||(54856807-54856882)
chr4 (23-67)||(49600147-49600191)
[»] chr6 (1 HSPs)
chr6 (36-78)||(2252379-2252420)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2327807 - 2327709
Alignment:
Q  1 tgaaattttttaacttgtcccttttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttggggttttaaaaccaaattag 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327807 tgaaattttttaacttgtcccttttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttggggttttaaaaccaaattag 2327709  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 32766087 - 32766139
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcatt 76  Q
    ||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||    
T  32766087 tttttaaaacattttgtatggtttccaaatttctaaattta-ttttagggcatt 32766139  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 1374512 - 1374575
Alignment:
Q  35 tttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||| |||||||||||| |||||||| | ||||||||||||||| ||  |||||||||||||||    
T  1374512 tttgtttggtttccaaatgtctaaattta-ttttagggcattttgaggatttttaaaaccaaatt 1374575  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 7154985 - 7154910
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  7154985 tttttaaaacattttgtatggttttcaaatttctaaattga-ttttagggcattttggggatttttaaaaccaaatt 7154910  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 35819073 - 35819136
Alignment:
Q  35 tttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    |||||||||||||||| |||||||||||| |||||||||||||| | |  |||||||||||||||    
T  35819073 tttgtatggtttccaattttctaaattga-ttttagggcattttagcgatttttaaaaccaaatt 35819136  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 25892727 - 25892802
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||  |||||||||||||||    
T  25892727 tttttaaaacattttgtatggtttccaaatttctaaattga-ttttagggcattgtggggatttttaaaaccaaatt 25892802  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 32226439 - 32226377
Alignment:
Q  35 tttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||    
T  32226439 tttgtatggtttccaaatttctaaattga--tttagggcattttggggatttttaaaaccaaatt 32226377  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 36536350 - 36536425
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||||  ||||||||||  |||||||||||||||    
T  36536350 tttttaaaacattttgtatggtttccaaatttctaaattga-ttttagatcattttggggatttttaaaaccaaatt 36536425  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 31460687 - 31460731
Alignment:
Q  35 tttgtatggtttccaaatttctaaattgatttttagggcattttg 79  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||    
T  31460687 tttgtatggtttcaaaattttgaaattgatttttagggcattttg 31460731  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 37491231 - 37491199
Alignment:
Q  35 tttgtatggtttccaaatttctaaattgatttt 67  Q
    |||| ||||||||||||||||||||||||||||    
T  37491231 tttgcatggtttccaaatttctaaattgatttt 37491199  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 14358540 - 14358615
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| ||| |||| |||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||    
T  14358540 tttttaaaacattttgcatggtttccaaatttctaaattga-ttttcgggcattttggggatttttaaaaccaaatt 14358615  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 48825957 - 48826015
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg 82  Q
    ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  48825957 tttttaaaacattttgtatggtttccaaatttctaaattga-ttttagggtattttgggg 48826015  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 37180038 - 37180100
Alignment:
Q  36 ttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||  |||||||||||||||    
T  37180038 ttgtatgatttccaaatttctaaattta-ttttagggcattttggggatttttaaaaccaaatt 37180100  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21529604 - 21529682
Alignment:
Q  1 tgaaattttttaacttgtcccttttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgg 80  Q
    |||||||||| || ||| |||| |||||| | | |||  |||||||||||||||||||||||| |||||||| |||||||    
T  21529604 tgaaatttttcaaattgaccctattttaaaatatttttaatggtttccaaatttctaaattga-ttttaggggattttgg 21529682  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 41653954 - 41654029
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| ||| |||||||||||||  |||||||||||||| |||||||||||||||| |  |||||||||||||||    
T  41653954 tttttaaaacattttgtatggtttctcaatttctaaattga-ttttagggcattttggagatttttaaaaccaaatt 41654029  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 3987349 - 3987395
Alignment:
Q  35 tttgtatggtttccaaatttctaaattgatttttagggcattttgggg 82  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  3987349 tttgcatggtttccaaatttctaaattga-ttttagggcattttgggg 3987395  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 41653809 - 41653865
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgg 80  Q
    ||||||| ||| |||||||||||||  |||||||||||||| ||||||||||||||||    
T  41653809 tttttaaaacattttgtatggtttctcaatttctaaattga-ttttagggcattttgg 41653865  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 36557021 - 36556981
Alignment:
Q  41 tggtttccaaatttctaaattgatttttagggcattttgggg 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  36557021 tggtttccaaatttctaaattga-ttttagggcattttgggg 36556981  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 54856807 - 54856882
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttttagggcattttgggg--ttttaaaaccaaatt 97  Q
    ||||||| ||| |||| |||||||||||||||||||||||| |||||||  |||||| ||  |||||||||||||||    
T  54856807 tttttaaaacattttgcatggtttccaaatttctaaattga-ttttaggatattttgaggatttttaaaaccaaatt 54856882  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 49600147 - 49600191
Alignment:
Q  23 tttttaatacactttgtatggtttccaaatttctaaattgatttt 67  Q
    ||||||| ||| |||||||||||||| |||||||||||| |||||    
T  49600147 tttttaaaacattttgtatggtttccgaatttctaaatttatttt 49600191  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 2252420 - 2252379
Alignment:
Q  36 ttgtatggtttccaaatttctaaattgatttttagggcatttt 78  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  2252420 ttgtatggtgtccaaatttctaaattga-ttttagggcatttt 2252379  T

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