View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_26 (Length: 208)
Name: NF20084_low_26
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 3675876 - 3675705
Alignment:
| Q |
19 |
atgtgaacttgtagtcttggcatgaaacacgccaacagaaacaaaatgaaatcatcgaccctgctactgtagtgtatgtatatttgcataataaaagtca |
118 |
Q |
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| T |
3675876 |
atgtgaacttgtagtcttgacatgaagcacgccaacagaaacaaaatgaaatcatcgaccctgctactgtagtgtatgtatatttgcataataaaagtca |
3675777 |
T |
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| Q |
119 |
atatttcttagaaccnnnnnnntagtgaaccttttnnnnnnnntagagtatactttattttaagtcaacttt |
190 |
Q |
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| T |
3675776 |
atatttcttagaaccaaaaaaatagtgaaccttttaaaaaaaatagagtatactttattttaagtcaacttt |
3675705 |
T |
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