View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20084_low_3 (Length: 603)
Name: NF20084_low_3
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_3 |
 | |
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| [»] chr3 (23 HSPs) |
| |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 603
Target Start/End: Original strand, 2768201 - 2768782
Alignment:
| Q |
17 |
atatgctaag-ctgttgaatttcaaatggggtaggataaataaaatcattgaataaaacaaccattcatacttgatcacattcagttgacaaaatacaga |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2768201 |
atatgctaagtctgttgaatttcaaatggggtaggagagataaaatcattgaataaaacaagcattcatacttgatcacattcggttgacaaaatacaga |
2768300 |
T |
|
| Q |
116 |
ataataaaccttttttctatgaaaaaacatcgtctgcatatagtaccaagttgataaaactaatcatgtttcatttcatcatattaccataggttgataa |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
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|
| T |
2768301 |
ataataaaccttttttctttgaaaaaacatcgtctgcatatagtaccaagttgataaaactaatcacctttcatttcatcatattacgatgggttgataa |
2768400 |
T |
|
| Q |
216 |
caaaagtgatggcattcctttagtttgactttttgaagcttaactttccttggcaccatttaaagttactgtaccccaaggaaaaaacaagagaggaaaa |
315 |
Q |
| |
|
||| || || ||| |||||||||| |||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||| | || |
|
|
| T |
2768401 |
caactgtaat---------ttactttgactttt-gaaggttaattttccttggcaccattcgaagttactgtaccc-aaggaaaaaacaagagag-agaa |
2768488 |
T |
|
| Q |
316 |
aacacaatactaggatgatatacacatgatcccaacagtata------atatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggcc |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
2768489 |
aacacaatactaggatgatatacacaagatcccaacagcttactaccaatatgagatgag--taaaatggcagaaactgctgtattatttgctcttgggc |
2768586 |
T |
|
| Q |
410 |
aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgca--gagatttttcagacatcaaagatgaacttgagagcattcaagtcttcct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2768587 |
aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcct |
2768686 |
T |
|
| Q |
508 |
caaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||| |||||| | ||| |||| |||||| | ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2768687 |
caaagatgcagacagaagggctgcggatgaagcagacaccaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattga |
2768782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 357 - 603
Target Start/End: Original strand, 2796826 - 2797074
Alignment:
| Q |
357 |
aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg |
456 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||| || || |||| || |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2796826 |
aatatgagatgagagtgaaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtg |
2796925 |
T |
|
| Q |
457 |
caga--gatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatg |
554 |
Q |
| |
|
|| | |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||| |||||||||||| |
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|
| T |
2796926 |
cacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaatgatg |
2797025 |
T |
|
| Q |
555 |
gaataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797026 |
gaataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
2797074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 358 - 603
Target Start/End: Original strand, 2789824 - 2790071
Alignment:
| Q |
358 |
atatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgc |
457 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| || || || |||| || ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2789824 |
atatgagatgagactgaaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgc |
2789923 |
T |
|
| Q |
458 |
aga--gatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatgg |
555 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
2789924 |
acaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatgg |
2790023 |
T |
|
| Q |
556 |
aataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2790024 |
aataagaacttgggtgaagcagctgagagaagcatcatttcgcattga |
2790071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 357 - 603
Target Start/End: Complemental strand, 2856483 - 2856235
Alignment:
| Q |
357 |
aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg |
456 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| | ||| || || |||| ||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2856483 |
aatatgatatgagagttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgta |
2856384 |
T |
|
| Q |
457 |
ca--gagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatg |
554 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||| | ||| |||||||| |
|
|
| T |
2856383 |
cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaatgatg |
2856284 |
T |
|
| Q |
555 |
gaataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2856283 |
gaataagaacttgggtgaagcagctgagagaagcatcatttcgcattga |
2856235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 2755525 - 2755656
Alignment:
| Q |
185 |
ttcatttcatcatattaccataggttgataacaaaagtgatggcattcctttagtttgactttttgaagcttaactttccttggcaccatttaaagttac |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2755525 |
ttcatttcatcatattaccataggttgataacaaaagtgatggcattcctttagtttgactttttgaagcttaactttccttggcaccatttaaagttac |
2755624 |
T |
|
| Q |
285 |
tgtaccccaaggaaaaaacaagagaggaaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2755625 |
tgtaccccaaggaaaaaacaagagaggaaaaa |
2755656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 357 - 603
Target Start/End: Original strand, 2748463 - 2748711
Alignment:
| Q |
357 |
aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg |
456 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | || || || |||| ||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2748463 |
aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta |
2748562 |
T |
|
| Q |
457 |
ca--gagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatg |
554 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||| |||||| | |||| || |||| |
|
|
| T |
2748563 |
cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatg |
2748662 |
T |
|
| Q |
555 |
gaataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2748663 |
gaataagaacttgggtgaagcagctgagagaagcatcatttcgcattga |
2748711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 363 - 603
Target Start/End: Original strand, 2806732 - 2806974
Alignment:
| Q |
363 |
agatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgcaga-- |
460 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| |||| |||| |||| |||||||||||||||||||||||| || | ||||| || | |
|
|
| T |
2806732 |
agatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctaaaaggtgtacacaca |
2806831 |
T |
|
| Q |
461 |
gatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaataa |
560 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||||||| | |||| ||||||||||| | |
|
|
| T |
2806832 |
gaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagcagacacaaatgatggaatta |
2806931 |
T |
|
| Q |
561 |
gaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
|||||||||| ||||| ||| | |||||||||||||||||||| |
|
|
| T |
2806932 |
gaacttgggtaaagcagctgcgcgaagcatcatttcgcattga |
2806974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 360 - 603
Target Start/End: Complemental strand, 2839270 - 2839025
Alignment:
| Q |
360 |
atgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgca- |
458 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||||| | ||| || || |||| ||| ||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
2839270 |
atgatatgagagttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacac |
2839171 |
T |
|
| Q |
459 |
-gagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaa |
557 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||| | ||| |||| |||||| | ||| ||| ||||||| |
|
|
| T |
2839170 |
agagatttttcagatatcaaagatgaacttgagatcattctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaa |
2839071 |
T |
|
| Q |
558 |
taagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2839070 |
taagaacttgggtgaagcagctgagagaagcatcatttcgcattga |
2839025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 356 - 603
Target Start/End: Original strand, 5412373 - 5412620
Alignment:
| Q |
356 |
taatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt |
455 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||| | ||| ||||| || | |||||||||||| ||||||||||||||| ||||| ||| | |
|
|
| T |
5412373 |
taatatgagctaagagttaaatggcagaaactgcagtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtat |
5412472 |
T |
|
| Q |
456 |
gcagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatgg |
555 |
Q |
| |
|
|| ||||||||||||||||||||||||||| || | ||||||| ||||||||||| |||||| | ||| |||| ||||||| | || |||||||||| |
|
|
| T |
5412473 |
acacagatttttcagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcagatgaagcggacgccaatgatgg |
5412572 |
T |
|
| Q |
556 |
aataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5412573 |
aataagaacatgggtgaagcatatgagagaagcatcatttcgcattga |
5412620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 374 - 603
Target Start/End: Original strand, 2818039 - 2818270
Alignment:
| Q |
374 |
aaatggcagaaactgcagtattatctgctcttggcc-aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgca--gagatttttcag |
470 |
Q |
| |
|
||||||||||||||||||||| ||| || |||| | |||| || || |||||||||||||||||||| || ||||| ||||| || |||||||||||| |
|
|
| T |
2818039 |
aaatggcagaaactgcagtatcatcagc-cttgtcggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagatttttcag |
2818137 |
T |
|
| Q |
471 |
acatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaataagaacttgggt |
570 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| |||||||| ||| || | ||||||| | || ||||||||||||||||||| ||||| |
|
|
| T |
2818138 |
acatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaagggcagcagatgaagcggacgccaatgatggaataagaacatgggt |
2818237 |
T |
|
| Q |
571 |
gaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |
|
|
| T |
2818238 |
gaagcaagtgagagatgcatcatttcgcattga |
2818270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 509 - 603
Target Start/End: Original strand, 2755663 - 2755757
Alignment:
| Q |
509 |
aaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaataagaacttgggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2755663 |
aaagttgcagatataagagctgaagaagaaaccaacaccaatgatggaataagaacttgggtgaagcatatgagagaagcatcatttcgcattga |
2755757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 369 - 603
Target Start/End: Original strand, 2758691 - 2758927
Alignment:
| Q |
369 |
gagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgcaga--gatttt |
466 |
Q |
| |
|
|||| |||||||||||||||||||| |||| || | || |||| |||||| | || || | | |||||||||| || || ||||| || | ||||| |
|
|
| T |
2758691 |
gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc |
2758790 |
T |
|
| Q |
467 |
tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaataagaactt |
566 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||| || | ||||||| | | |||||||| ||||||||||| | |
|
|
| T |
2758791 |
ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat |
2758890 |
T |
|
| Q |
567 |
gggtgaagcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2758891 |
gggtgaagcatatgagagaagcatcgtttcgcattga |
2758927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 2805093 - 2805232
Alignment:
| Q |
51 |
ataaataaaatcattgaataaaacaaccattcatacttgatcacattcagttgacaaaatacagaataataaaccttttttctatgaaaaaacatcgtct |
150 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| || | |||||| |||| |
|
|
| T |
2805093 |
ataaataaaagcattgaataaaacaatcattcatacttgatcacattcagtgttaaaattacagaataataaaccttttttctttg-agaaacatggtct |
2805191 |
T |
|
| Q |
151 |
gcatatagtaccaagttgat-aaaactaatcatgtttcatt |
190 |
Q |
| |
|
|||| || |||||||||||| |||| |||||||||| |||| |
|
|
| T |
2805192 |
gcatttaataccaagttgataaaaattaatcatgttccatt |
2805232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 2806442 - 2806647
Alignment:
| Q |
27 |
ctgttgaatttcaaatggggtaggataaataaaatcattgaataaaacaaccattcatacttgatcacattcagttgacaaaatacagaataataaacct |
126 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||| | ||| |||| | ||||||| |
|
|
| T |
2806442 |
ctgttgtatttcaa-tggggtagcataaataaaagcattgaataaaacaacaattcatacttgaccacattcagtggtaaaattacaaactaataaa--a |
2806538 |
T |
|
| Q |
127 |
tttttctatgaaaaaacatcgtctgcatatagtaccaagttgataaaactaatcatgtttcatttcatcatattaccataggttgataacaaaagtgatg |
226 |
Q |
| |
|
||| || ||||||| ||||||||||| ||||||||||| ||||||||||||| ||| |||||| |||||||| | ||||||||||||| | | |
|
|
| T |
2806539 |
aaaatcttggagaaaacatggtctgcatataataccaagttgacaaaactaatcatg-ttccgctcatcacgttaccatatgctgataacaaaagtaacg |
2806637 |
T |
|
| Q |
227 |
gcattccttt |
236 |
Q |
| |
|
|||||||||| |
|
|
| T |
2806638 |
gcattccttt |
2806647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 2755463 - 2755522
Alignment:
| Q |
64 |
ttgaataaaacaaccattcatacttgatcacattcagttgacaaaatacagaataataaa |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2755463 |
ttgaataaaacaagaattcatacttgatcacattccgttgacaaaatacagaataataaa |
2755522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 2748122 - 2748180
Alignment:
| Q |
27 |
ctgttgaatttcaaatggggtaggataaataaaatcattgaataaaacaaccattcata |
85 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
2748122 |
ctgttgaatttcaaacggggtagcataaataaaatcattcaattaaacaaccattcata |
2748180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 5412237 - 5412282
Alignment:
| Q |
246 |
ttttgaagcttaactttccttggcaccatttaaagttactgtaccc |
291 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
5412237 |
ttttgaagcttaaatttccttagcaccattcaaagttactgtaccc |
5412282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 2748324 - 2748383
Alignment:
| Q |
239 |
tttgactttttgaagcttaactttccttggcaccatttaaagttactgtaccccaaggaa |
298 |
Q |
| |
|
||||||||||||||| |||| || |||||| |||||| ||||||||||||| ||| |||| |
|
|
| T |
2748324 |
tttgactttttgaaggttaatttgccttggaaccattcaaagttactgtactccagggaa |
2748383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 530
Target Start/End: Original strand, 22104280 - 22104334
Alignment:
| Q |
476 |
aaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctg |
530 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
22104280 |
aaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctg |
22104334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 530
Target Start/End: Complemental strand, 30990199 - 30990133
Alignment:
| Q |
464 |
ttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctg |
530 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||| ||| || |||| ||| |||| |||||||| |
|
|
| T |
30990199 |
ttttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagagctg |
30990133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 501
Target Start/End: Original strand, 3200526 - 3200558
Alignment:
| Q |
469 |
agacatcaaagatgaacttgagagcattcaagt |
501 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
3200526 |
agacatcaaatatgaacttgagagcattcaagt |
3200558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 3311179 - 3311139
Alignment:
| Q |
470 |
gacatcaaagatgaacttgagagcattcaagtcttcctcaa |
510 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
3311179 |
gacatcaaagatgaccttgagagcatccaagccttcctcaa |
3311139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 3322778 - 3322738
Alignment:
| Q |
470 |
gacatcaaagatgaacttgagagcattcaagtcttcctcaa |
510 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
3322778 |
gacatcaaagatgaccttgagagcatccaagccttcctcaa |
3322738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 375 - 603
Target Start/End: Complemental strand, 6807 - 6577
Alignment:
| Q |
375 |
aatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtgcaga--gatttttcagac |
472 |
Q |
| |
|
||||||||||||||||||||| | ||| || || || | ||||||||||||||| ||||||||||||| ||||| ||||| || | |||||| ||||| |
|
|
| T |
6807 |
aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac |
6708 |
T |
|
| Q |
473 |
atcaaagatgaacttgagagcattcaagtcttcctcaaagttgcagatataagagctgaagatgaaaccaacaccaatgatggaataagaacttgggtga |
572 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||| | || |||| ||||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
6707 |
atcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgggtga |
6608 |
T |
|
| Q |
573 |
agcatctgagagaagcatcatttcgcattga |
603 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |
|
|
| T |
6607 |
agcatatgagggaagcatcatttcgcattga |
6577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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