View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20084_low_4 (Length: 528)
Name: NF20084_low_4
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 76 - 520
Target Start/End: Original strand, 7432049 - 7432498
Alignment:
| Q |
76 |
gataggcaaaacgcagagagtgagctaagtcaatgtatcattgcgaacattgtaaatcttaattcatcaaaagaaggagctcaagagtattgtttgtaat |
175 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7432049 |
gataggcaagacgcagagagtgagctaagtcaatgtatcattgcgaacattgtaaatcttaattcatgaaaagaaggagctcaagagtattgtttgtaat |
7432148 |
T |
|
| Q |
176 |
atggattgtagtattgcgtatactaatcgtaacattgtaaccatatttcatctaaagaaata-----ttagagatttagttgttctatagtcgcaaaagt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
7432149 |
ctggattgtagtattgcgtatactaatcgtaacactgtagccctatttcatcaaaagaaatacagtattagagatttagttgttttatagtcgcaaaagt |
7432248 |
T |
|
| Q |
271 |
gtgcatta---tttgtcaaactacatgaacaaagtatgtgtctatgtgtcttgcgatattcttttattttatttttctatcgttcgttggtgttctaata |
367 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
7432249 |
gtacattactatttgtcaaactacatgaa---agtatgtgtctatgtgtcttgcgatattcttttattttatttttttatcgtttgttggtgttctaata |
7432345 |
T |
|
| Q |
368 |
caatcattcgactatttagacttcgtttgaccttaattggttggtggtttattttcaactaattgtaacatatgtaatcttttttcatagctaatatttt |
467 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7432346 |
caatcattcgactatttagacttcatttgaccttaattgattggtggtttattttcaactaagtgtaacatatgtaatcttttttcatagttaatctttt |
7432445 |
T |
|
| Q |
468 |
tattagatttgcttcttgttccaaattattgatccttttttctcttcttctct |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7432446 |
tattagatttgcttcttgttccaaattattgaaccttttttctcttcttctct |
7432498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 7429555 - 7429609
Alignment:
| Q |
25 |
tataattcaattgatcattctatcgattatgtctcatatatagatataaaagata |
79 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7429555 |
tataattcaattgatcattctatcgagtatgtctcatatatagatataaaagata |
7429609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 7429485 - 7429554
Alignment:
| Q |
4 |
tgtagctcgtatttgattgtctataattcaattgatcattctatcgattatgtctcatatatagatataa |
73 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || | || |||||||||||||||||| |
|
|
| T |
7429485 |
tgtagctcatatttgattgtctataattcaattgatcattctgtcaagcatatctcatatatagatataa |
7429554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University