View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20084_low_5 (Length: 527)
Name: NF20084_low_5
Description: NF20084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20084_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 40 - 510
Target Start/End: Complemental strand, 54266881 - 54266414
Alignment:
| Q |
40 |
aaaccaaagttgtgagaccatatagtagcttttgcgnnnnnnnnna-aaaccaaaagcgtaaccatcaaaattatgaaatctgggcttgcatgcggataa |
138 |
Q |
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| T |
54266881 |
aaaccaaagttgtgagaccatatagtagcttttgcgtttttttttttaaaccaaaagagtaaccatcaaaattatgaaatctgggcttgcatgcggataa |
54266782 |
T |
|
| Q |
139 |
cctagccaatccatgagggcagtcccattatcatcaagatttaacaaaacgaatgaagaattctccaaaccactagaagcattacaagccaatggctaac |
238 |
Q |
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| T |
54266781 |
cctagccaatccatgagggcagtcccattatcatcaagatttaacaaaacgaatgaagaattctccaaaccactagaagcattacaagccaatggctaac |
54266682 |
T |
|
| Q |
239 |
ttaggacaatttatttatttt-catgttgagagtgtacaaacaagggaccaatttcaatcaacacaggatgaagaccaaatccttgaacgaaccaactat |
337 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266681 |
ttaggacaatttatttatttttcctgttgagagtgtacaaacaagggaccaatttcaatcaacacaggatgaagaccaaatccttgaacgaaccaactat |
54266582 |
T |
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| Q |
338 |
accatcttgcgtctgaaactaaatgtatggtttagcataaattattatcttaaaaatagtaaatttgattttaaacaaatagattttgtgcatttaaatt |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266581 |
accatcttgcgtctgaaactaaatgtatggtttagcataaattattatcataaaaatagtaaatttgattttaaacaaatagattttgtgcatttaaatt |
54266482 |
T |
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| Q |
438 |
ccttttttaattaaaattgctatcctttatttgtggattcgtgttaactcatagtaacaattgacatttgcgt |
510 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
54266481 |
ccttttttaattaaaattg-----ctttatttgtggattcgggttaactcatagtaacatttgacatttgcgt |
54266414 |
T |
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